>Osa09LNT0442000.1

GGTGGCGCACTTCCGCTCGTGGGACCGAAGCGGTGCCGCTCGCCCGTCCTGCGCGACTGGCCCGGCCACCGATTCGTGTAGGAGAACTACTCAGTCACCACGAGATCCAAGTATCTGCTTCTTGATGGAGCCAATTCTGGTGATCAATTCATCCCGATTTTCCTTAAAAATCAAATATCGCGAGGTGAACCAAACTGTGAATCCAAGGCCGACAACTTCCATCACCTGGGGAACCAAAGGGACTGAATCAAGTGCAGAAACAACAATTGATGAAATCCAGATCGTAACAAGCGCAGATGTCCCATAAACAAGAGCAGTATATGAATTTTCAGAGTCCAACTCGACGCCAATCTGGTTGAGAACATTCCAGGAAGTCGATTCCCCCTGCACCTGGACCTCTCCATCCCCATCACCCACCTCCCGGCCAAACCCCTCCCACCCCTCCCGCTTCGCAGGCGCCGGCTCCGCGGGCTTCTCCGAGATCAGCACTCTCAGATCGTCGGAGTCCTTCGCCCGCACGGCCAGCGAAGACGCCCCGGCGCGGCGGCGGCCAAAACCTTGGTTCGGCAGGGTGGCCCGCGCCGGGCGGAGAGGGAGGCGCACGAGCGCGGCGGCGGCGGCGGCGGCGGGGGCCATCGGAGTCTCGATTCGCGGCGGAGAGAGAGGGTGGCGAGGTTTCTGGGAGGAGCAGCTGACTCGCAC

Explanation	CPC Score
noncoding	-1.07233

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0442000.1	9	17659880	C	T
Osa09LNT0442000.1	9	17660375	C	G
Osa09LNT0442000.1	9	17661254	C	T
Osa09LNT0442000.1	9	17662060	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0442000.1	osa-miR156j-3p	Cleavage	4.5	19.342	1	22
Osa09LNT0442000.1	osa-miR5514	Translation	4.5	20.76	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0442000.1	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0442000.1	9	qSB-9	Resistance or Tolerance	Sheath blight resistance	C472	R2638
Osa09LNT0442000.1	9	nan	Morphological trait	Panicle/flower	RM257	RM566

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus