\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0442600.1

AATTCTACAACGAGTGGGCTGGCCCACATTGAGCCCAACCGGTGCCACCATCGACGACCTCCGCCTCTCGCCCAGCCGCCCTCATCGCTTTCCGGTCGCCGTCGCTCCGAAACCCCATGAACCTTTCCCCCCCTCCCTTCGCGCCGCCGCCACCCCTATCCGCGCCATCACCGGGAGTGAGAAAGGCGACAGCTGCAGCAGGAGCAGACCGCGCGAGAGAGCGAGAGGGAGGAAGGTATGGGAAGCGGCAGGAAGCGAGGGCGCACTGTCAGGAGCCGGCCAGATGAAAGGTCCTGAACGCAGCGCCGCCACTTCAAGCAGGGGCGCGAGAACATCTTGAAGCACAAACCCCAGCGCCCTCCTGTGGCGAAGGAGCCGAAGGAAGCGGTGATGGGTGCAGGGGAACCCCTCGTGGTAGCCCTTCACCACCGAGAACCCGGCTTGGAGGACTACTTACAAGGTGCATTGAGGTTGAACGCTTTCTGGCATGTGAGAAGCTCTACGAGAACAACTCCGAAGCTATATACGTCACTCTTATCTGTTAATTGACACAACTGCA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.322561
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0442600.1 osa-miR156a Cleavage 5.0 9.225 1 20
Osa09LNT0442600.1 osa-miR156b-5p Cleavage 5.0 9.225 1 20
Osa09LNT0442600.1 osa-miR156c-5p Cleavage 5.0 9.225 1 20
Osa09LNT0442600.1 osa-miR156d Cleavage 5.0 9.225 1 20
Osa09LNT0442600.1 osa-miR156e Cleavage 5.0 9.225 1 20
Osa09LNT0442600.1 osa-miR156f-5p Cleavage 5.0 9.225 1 20
Osa09LNT0442600.1 osa-miR156g-5p Cleavage 5.0 9.225 1 20
Osa09LNT0442600.1 osa-miR156h-5p Cleavage 5.0 9.225 1 20
Osa09LNT0442600.1 osa-miR156i Cleavage 5.0 9.225 1 20
Osa09LNT0442600.1 osa-miR156j-5p Cleavage 5.0 9.225 1 20
Osa09LNT0442600.1 osa-miR2118d Translation 3.5 20.496 1 22
Osa09LNT0442600.1 osa-miR2118f Translation 4.0 20.496 1 22
Osa09LNT0442600.1 osa-miR2118h Translation 4.5 20.496 1 22
Osa09LNT0442600.1 osa-miR2118j Translation 4.0 20.496 1 22
Osa09LNT0442600.1 osa-miR2118k Translation 4.5 20.496 1 22
Osa09LNT0442600.1 osa-miR2118l Cleavage 4.5 20.496 1 22
Osa09LNT0442600.1 osa-miR2118m Translation 4.0 20.496 1 22
Osa09LNT0442600.1 osa-miR2118p Translation 5.0 20.496 1 22
Osa09LNT0442600.1 osa-miR2919 Cleavage 3.0 9.596 1 19
Osa09LNT0442600.1 osa-miR2926 Translation 3.0 12.022 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0442600.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0442600.1 9 nan Morphological trait Panicle/flower RM257 RM566
Osa09LNT0442600.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus