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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0002700.1

ACTGCTACATGGGCCATAGAAGTGGGGCCCAAATGCCGCATGATATCCTTTGACCTTGCGTTGCCGGCGGCGGTTATTACGGCCATGGAGATCTCGCGCGGCCATTTGCCGGTGAGGTCGGCTGCTTCGCCGGCGCCTCCGCCTCCGCATCTACGCCTGGTTGATCCCCCAACGCTATCTCCACTGTGCTATCGCGTTTCCGGCGGTGGTTGATCGAGGCGGTAGCCCGTGCGGCGCGCGAGATTCCGCTCGTCCATGGATTTCCGGTCGCCGTCGCCGGGATTCGTCTTCTCCGGCCAGCCCCTCGCCGCGCGAACCTGCGCCGCCCGTCCTCGGCAAGGATCTGATCGGGATCGCTTGTGGGGGAACGTTGACTTGTAAGAAGACCAGAGCCATCTGTTCTGATTTGAGAGGCCTGTATATTAACCTGTCAAAGACTCAAAGAGCAGCGAAGGAAATGTTTCATAGCCTTGTTAGACATAACTTTGCCAGGAGATCTGTCTGTTTTGATGCCCACAGGCTGTTATGGGGGTTGCTAGTCACTTGCTCTTACATGCCCTTCTGCTGGCATAAGATGATAGTCTGGTGTAGGTTCTGTTGTTGAACCCTGGAAGTCTGGAACACAACCGGTGCTCAGAAGACTTTCATATCACTGCAGCCTACCAGGATTTGATAGAGCAATTTGATATGTTTGGTGAAAATTCATACACATTTGAGTTATTGTACAATACTCAGAAATTGGTGTTTTCTATCCTCTGGTAATTGTGGATCACTGGCATATTGAAGAATCAAACCTGACATATAATTGCCAGGGTCTGTAATTTTTATACATGTGGAGATTGGTGTGCATACCAAATGTTCTGCATCATGTAATCAGAAGAGTTGTTTAGGAGAGGCATAGGCAAATTCCCTTGTAAGGCTTTTGTAGTTCCTTGAGTGAACGTAGTTATAACAGTTCTGTTTTCTACGACAAAA

Coding Potentia
Explanation CPC Score
noncoding -1.10343
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0002700.1 1 2459416 T C
Osa01LNT0002700.1 1 2459423 T C
Osa01LNT0002700.1 1 2459504 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0002700.1 osa-miR5837.2 Cleavage 4.5 17.008 1 21
Osa01LNT0002700.1 osa-miR444d.3 Cleavage 4.5 21.809 1 21
Osa01LNT0002700.1 osa-miR396f-5p Cleavage 4.5 24.307 1 22
Osa01LNT0002700.1 osa-miR396g Translation 5.0 24.263 1 21
Osa01LNT0002700.1 osa-miR396h Translation 5.0 24.263 1 21
Osa01LNT0002700.1 osa-miR396d Translation 5.0 24.263 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0002700.1 1 nan Physiological trait Source activity RG532 RG472
Osa01LNT0002700.1 1 qFLL-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0002700.1 1 qFLP-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0002700.1 1 gp1a Morphological trait Panicle/flower RM1 R753
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus