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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0442800.1

CTTGGTCTTTGGCATTCCTTCTTTGTATCATGTCTCCCCCATCTCCTGTGATGGAATCCCCTCGGCTCATTGAGGATGATGGTGAGGAATGCAACAGTAATGAATCCGGGTGGACGATGTACCTATGTTTTTTCTTGAGCAAAAATTCTTGTAGGAGGCATGTAGAATGGAATGCCTTGTGAGGGTCCTCGGCTCCTCGCAATTGTCTTCCAAGTTTTTGTCCATTTGTTAACCACCTCATAAGTAAAGCAAATTTGAGGCCCTCTGGTTATTATTCAATGACATACTTTCATTATCTCTTTCAAAATTGTATGCTCCTGTCTTTTATCTGTAAGAATGAAAACTACTATACAGAAAGCCACATTTTGTCCAGATAAACTTTCTCAAGGTATGAATTGTTCAAGTCACCAACACAAAAGGATAGTTCAATCTAATGGATTCAGTTTTTCCAGTATTTGTAGCGGTTATACTCAGAAAAGAGAACATAGTAACCTGATTTGTTTTGTTTCTGTGGATAATTTGACCATCATAACTAATCTAATCCAAAATCTACTATGACAAATAGTTGCAGCGGAGCATGATGTATTTAGGTCATGTTTATGTTTTCTTTTGCTGAACTAATGCTCGTGAAGATCATATATAAGAAAAAGCACTCTAACTCAGCTAATGTGCCATTTTTACCTTTTTAGATGAAATCTATTGCCTCAAGGAGCTGAACCTTCCATACTTCCATATAAGAATAAAACAATGTACATAAGGTATATGAGATGTAAAACCCTAAAAGTTGCCAAGGTTGACTAAATGGGAAATTTACAATACAAACAGCTAATATCGGCAGAATAGTACAAGTAAACATAACATTCATACAACTACAAGTGCATCGAACTATCACCTGATACGTGTGATTCACTACACTTGCATCTACATTAAGTGTCTGAAGGAAGCTCTGGCATCAAATGGTGCGCCTTCTGCTATGCATATGGTGCATGAGAAGGCATGCCTCCAACAACAATCTCATTCCGAGGGGGGTTGTGGCGGCGGTGATGAGCAGCGGGTGGCTAGGACGCGACGGGCTTGGAGTGGTGGAGGAAGGCGGCGGAGCAGAGCACGGCGGTGACGACGGCGAAGAGGCCGAGCGCGACCACCAGCGACAGCCCGGCCACCGCCAGATCCAGCATCAGCTGCGCGCCGTGGAACACCGCCCCCAACGCCATCGGGCCTCCTCCTCCTCCGATCCCCCTCGTCGCCCTCGCCGATGCCTATATCGTAGGCAGCGGAGAGAGAGGAAGGAGGGGGGGGGGGGGGTGAGAAGAGAGGGAGGCGGTGGCGCGACACGCGGCGCGGCGAGCGCGGGCGAGGAGGCGGCGAGCCGACCACCTGGACGAGCGCTCGTGCC

Coding Potentia
Explanation CPC Score
noncoding -1.0751
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0442800.1 9 18097927 T G
Osa09LNT0442800.1 9 18099696 A G
Osa09LNT0442800.1 9 18100123 A G
Osa09LNT0442800.1 9 18100366 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0442800.1 osa-miR5543 Translation 3.0 9.232 1 21
Osa09LNT0442800.1 osa-miR5543 Cleavage 5.0 10.542 1 21
Osa09LNT0442800.1 osa-miR5804 Translation 4.0 18.911 1 21
Osa09LNT0442800.1 osa-miR5179 Cleavage 4.0 19.086 1 21
Osa09LNT0442800.1 osa-miR2105 Cleavage 4.0 13.185 1 20
Osa09LNT0442800.1 osa-miR5148a Cleavage 4.5 10.132 1 24
Osa09LNT0442800.1 osa-miR5148b Cleavage 4.5 10.132 1 24
Osa09LNT0442800.1 osa-miR5148c Cleavage 4.5 10.132 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0442800.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0442800.1 9 nan Morphological trait Panicle/flower RM257 RM566
Osa09LNT0442800.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus