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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0443500.1

ATCATACTCTCTCCATCCCTAAATATAAGGGATTTAAGTGTCAAAGTACCATGAATCTCACATCTATTTAAAATCCCTCGTATTTTAGGACGGAGATAGTATATAAAAGGAAGGAGGGAATAACTGGTAACAGCCACATTTACAAACAAATCTATCATCCATCAGTCTTCATCCGAAAATATTCACAAATGACAAACAAATCTATTATGCCACTTCACTCTTCACTCAGCGAATCAGATTCCAAAAACTGTCCCTGTTCTATCGGTCCATGTCTGGCGTCTGCGTCAACGACGTGCACTCGCGTGCATCGAGGGAATCACAGTAAATGTGGCAGTATCGGCCAAGGAGTAAAAGATGGCGAAGTGAGAAAACCAAGCACATCTTTCCAGATGAACCTGGCCAGACTGACGATGAAGATTCACGGATCCTTGGTGTGGTTCACCACTTGCCAGTATTGTAACAGACGGGGTGTTTGGACCAGGGACTTTGTTCGTATTTAGTGTTGTCCATTTCTTCTGAATCATTTTTTCTTAGCACTTTCTTCTGCTCTAGTAAAAGCATCCATGATCATATCGGTAGCCCAATCCTTGACATCCTCCAGCCGTACTGGTTCCCCAGTTCTTATACGGGCATGCGGACGAGCTAACTTCGATTCAAAAGGGGTCCTTGGCCTGACTTCTTGGATCTCATCCCATTCTTCACGCGTAAGCATCCTTACTTTTCCTTGATCAGGGTGGCTATTCTTTATCTTGCGTTCTCCTCTTTCTTGATCTGCTGCATCATGTTCCATCATGAGCAGCTTGGTGAAGAGCGCGATGGCGGCCGCCGTGAGCACCATGGGGAGGGAGGCCGAGTCGAGCCACGCGAGCGACTCCGGCGTCGCCACGAAGAACTCGTCGCGGGACGGGTCCCGTGGCCGCCTCCGCGCGCGCTCCCGCTCCGCCACTTTCCGCCGGAGAAGGGCACCCGGAGATCCGTCCGCTGCCGCCTCCGCCGCCGACGACGACGACGCGGCGTGCCTCACGGCCGCCCCTCCCCGGCGCAGCGCCGACCGCAACATCGCCGCCGCCGCCGCCGCCGCCGGCGACTCGGACAAGACACGAGCCCTCGAGAATGGGAAGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.88505
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0443500.1 9 18330024 T C
Osa09LNT0443500.1 9 18330635 T C
Osa09LNT0443500.1 9 18330668 A G
Osa09LNT0443500.1 9 18330933 T A
Osa09LNT0443500.1 9 18331709 C T
Osa09LNT0443500.1 9 18332091 G C
Osa09LNT0443500.1 9 18332932 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0443500.1 osa-miR5837.1 Cleavage 4.5 22.691 1 21
Osa09LNT0443500.1 osa-miR6248 Cleavage 3.5 20.92 1 21
Osa09LNT0443500.1 osa-miR159a.1 Cleavage 3.0 22.423 1 21
Osa09LNT0443500.1 osa-miR159b Cleavage 3.0 22.423 1 21
Osa09LNT0443500.1 osa-miR159c Cleavage 4.0 22.423 1 21
Osa09LNT0443500.1 osa-miR159d Cleavage 4.0 22.423 1 21
Osa09LNT0443500.1 osa-miR159e Cleavage 4.0 22.423 1 21
Osa09LNT0443500.1 osa-miR159f Cleavage 4.0 22.423 1 21
Osa09LNT0443500.1 osa-miR818a Cleavage 2.0 20.92 1 22
Osa09LNT0443500.1 osa-miR818b Cleavage 2.0 20.92 1 22
Osa09LNT0443500.1 osa-miR818c Cleavage 2.0 20.92 1 22
Osa09LNT0443500.1 osa-miR818d Cleavage 2.0 20.92 1 22
Osa09LNT0443500.1 osa-miR818e Cleavage 2.0 20.92 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0443500.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
Osa09LNT0443500.1 9 mrl9a Resistance or Tolerance Drought tolerance RM201 RM410
Osa09LNT0443500.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0443500.1 9 nan Morphological trait Panicle/flower RM257 RM566
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus