>Osa09LNT0443700.1

ACTCACATCATCCAAATTTTTATATTTTATGACTAAAAGAGTCCAAGTAGTAGCAACTTTTATTCATTTTTACTTTTACCCAACGCACTTTCTGAAAAGTACATCCATGGAGAGGGGATCGGTGTGTTGTGGTGGTCAGGCCACGCGGCGGCAGAGCATGACGCCGTCGGCGATGGCGAGCTGGCACGGCTTGACGCGGCGGTCGGCGGCGATCGCCGCGTTGAACTCCCTGGCGAGCGCGGCGAGCGAGCGGTCCCGCCCCGACGGCACCGCCTCGTCGGCCGCCGCCGGCGGCGCCGCCACCGAGCCGCCCCACAGCGTGTTGTCGTAGGCGATGAGGCCGCCGACCCTGACCAGCTGCAGCAGCCGCTCGTGGTAGCCGAGGAAGTTCACCTTGTCCGCGTCCACGAACGCGAAGTCGAACCTCCCCTTGTTCCCCTCCTCGGCGACGAGCTCGTCGAGCACCGGCATGGCGAGGCCGACGCGGAAGTCGACCTTGTGCGCCACGCCGGCCTTGTCGATCACCGGCGCTCCGACCTCGTCGTAGCTCTCCCGGCTCACGTCGATGGCCACGATCTTGCCGTCGTCAGGGAGCGCGAGGGCGGTGGCGAGCAGCGAGTACCCGGTGAACACGCCGACCTCGATGGCGTTCTTGGCGCTGATCAGCTCGATCAGAAGGCCGAACAGCTGCACCTGATCCGGCGAGGCCGCCATGACCGCCATGGGGTGATTGGCGGTGGCGAGGCGGAGCTCGCGCAGGCAGTCGGGCTCGCGCGGGAACACGGTGGACTCCAGCACGTACTGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCGTCGCTCGCCGTCGGTGATCAATTGTTTTTCTTTGTTTGGTTGTTTAGATGGATAATTAATTACCTGGTAGAGCGGCTCGCTCTTGAGGAGGGTCTTACTGTGCAGGCTACCTCCGCCGCCGCCGCCGGCGACGGCGGCCGTCTCCTTGCCTTCTCCAGCGCCGGTGGCCGCCATCTGCTCTTCCTTGTGGTTCGTTGCGCTCGCCACCAGGCACCAGCTAT

Explanation	CPC Score
noncoding (weak)	-0.569361

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0443700.1	osa-miR5827	Translation	4.5	8.493	1	21
Osa09LNT0443700.1	osa-miR156b-3p	Cleavage	4.0	10.676	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0443700.1	9	mrl9a	Resistance or Tolerance	Drought tolerance	RM201	RM410
Osa09LNT0443700.1	9	qCCAI-9	Physiological trait	Source activity	RM257	RM201
Osa09LNT0443700.1	9	qSB-9	Resistance or Tolerance	Sheath blight resistance	C472	R2638
Osa09LNT0443700.1	9	qLVBFL9-1	Morphological trait	Panicle/flower	R2638	RM257
Osa09LNT0443700.1	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0443700.1	9	cisc(t)	Resistance or Tolerance	Cold tolerance	nan	nan
Osa09LNT0443700.1	9	qGL9	Morphological trait	Seed	RM257	RM242

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus