\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0444100.1

TGGCAACAGATCAAAAATAGGATTAGAGCAAAAGTGCCTTCATCAAACTTCATCGTTAAAGAAAGCAGATAACCTAGCGAATCTTACATTCCCACCTATGATCCTCTTTACTTACATACATGTCGAACTATCCTAGTGTGTGACGTATACATGGCTGATGGCTCAAACATTTGCTCTTGATTGGAATGCGCAGCTCTTGAAAAATTTTCGTGCGTCATGTTTGCATTCAATAATCATGAGTTCATGATCCTCCAAATCTGCAGGACCTCTACATATCCTCATTCCTCAATGATTCATTGATAATATCCTCATCGCCGTCACTGTTATCGTCCTCGTTTTGAGAGGTAAAAATGGGAGTAAGGTAATGCTTGTCCAGTAAAGCGAAAGAAGAGGTGCTTCTCTGGAGCTCTTTGAGTTTCATTGTGAAATTGCTTGATGTTGATGTTTCTTCCCCGTAACGTTGCCCAGGGTAGCCAGCATTGTTCCCATCAAAGTTATGCTCATATGGATGGCGATAGCGATTACTATCCCCAACTACTTGCAGGGATTCAAGCATTGTTCCAGTTGAGCCTCCAATTAGAAGCACAGTTAGAACAACAATAGATGTGGTAGCGGTGAAAATTGTCTCGCCATGTCCTTCAGGAAGATCATGAATAGACTGAAGTGCAAGGGCAAAAGCCATTGCCCCCCTAAGACCACTATACCAGAGTGCCAGCTGATACTGCCTAGGTATTTGGCAGTGCACCGGTCGTGCCAAATTTAATATATATGCACAAGAGAAGACATTTGCGGCCCTTGCAAGTAATATAAAGATAACTGAGAAAAAAATGAATCCAATATGTGACCAGCTTTGACGCTCCATCGCAATATCAAATCCCATGTATATGAACACGAAAGCCTCTGCTAGTGATGAAAGTAGATGGAAAAAACGAGCTGTAAAACGCTGAGAATCTTCTGATAAGTTATAGAAGGTGTATCTCTTCATAACAATTCCAGTAAACAGAATAGAGACAATACCAGACAAACCAAAGCCTTCAGCTAGCATGTACGAGAAGTAAGGGAAAAGGACAAACAAGCAACTCTCCAGATTATGAAGGTTCTCAACACCTAGAGCTGCATACTTGAAGAGGAGGGCAGAAATGAATCCAACCCCAACACCTGATGACATTGAACCAACAAAATTCTCAAGAAACTTAAGGATAGCTAGAAAATAGTTCTGTCCAGAAGAACTTGTTCTCAGTGAAGCCATACTCCTATACAAGGATATAGCCACAGCATCATTGAGAACTGATTCTCCAAAAACCAGCGCATAGAGGTTCACATCAGTGCCAAGTTCCTGAAATATGGACAGTACAGTAACAGGATCAGTTGCTGACACCAGAGCACCAAACATCATGCACTCAACCAGAGGCAACTTATAGACAATGTATATTAACCCACCAACGTATACTAAAAGACCAGTGACAATAGAAGCAATGAAGGTTCCCAAGATTGCAAATGTTATAATGGCACCAAAATTTGAAAAGAATGGTTTTGGTGCTAAGCTGAATCCAGACTGAGTAAGATTCAGTCAAGTAAAACATGGTAAATTTCCGTACAAGTAATTAAAAAACAAAATCAAGATACAAAAAAGGATATAATATAATTGGAGGAAGTAAGAAAAGAAGGAAGAAGTCCTCCCGAAAATTGAACCATCTCCTAATACTTCTTTGAGTGTTTGATATCTTAGCAAGGCCGCCAACAATCATCCCGATGAGGAGGGAGGCGCTGGCCTCGGGGATGTAGTAGACCTTGCGGCGGCGGAGGACGTGGCCGAGCACGAAGGAGACCACCAGCATCGATATCTGCAGCAGGATCCCCACCCCGGCCGCCTTCTGCTCGTCCACCGTCCCCG

Coding Potentia
Explanation CPC Score
noncoding -1.12958
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0444100.1 9 18544255 A T
Osa09LNT0444100.1 9 18544305 G A
Osa09LNT0444100.1 9 18544742 T A
Osa09LNT0444100.1 9 18545657 T G
Osa09LNT0444100.1 9 18546791 A G
Osa09LNT0444100.1 9 18548499 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0444100.1 osa-miR5793 Translation 4.0 13.904 1 21
Osa09LNT0444100.1 osa-miR397b Cleavage 4.0 16.668 1 21
Osa09LNT0444100.1 osa-miR435 Translation 4.0 13.62 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0444100.1 9 nan Resistance or Tolerance Other soil stress tolerance R2638 C1263
Osa09LNT0444100.1 9 cisc(t) Resistance or Tolerance Cold tolerance nan nan
Osa09LNT0444100.1 9 qGL9 Morphological trait Seed RM257 RM242
Osa09LNT0444100.1 9 qCCAI-9 Physiological trait Source activity RM257 RM201
Osa09LNT0444100.1 9 mrl9a Resistance or Tolerance Drought tolerance RM201 RM410
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus