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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0444200.1

GTGTGTGCCTGCTTGGGTGCTTGTTGCTTCTCAAGGATTATACTGTACGACACTTCAGAACAAACTCGTAACTTATCTATTTTTCAAGAGAACGTACTCATGGTACGCAGTACACAGTAATAGAAGTGTATGCCTGCTTGTTGCTTTCAAGGATGAAACTGTACGATATTTTACAACTTATTGGATTTCATGCAGATGTATGCGTTTCATGATTTCAGTTTATTTGGCCTTCAGATTCTCCAACGTATTGTAATACCCAGCTTTTTACACCTTTTCTTATTCTTTTTTTTAGACGGTTAAACAGCAGAATAGGCTCCTACTGTGATATATTAAAATATAATATGTACATGAGAGAGATAGTACAAGGGGGGGCGGGGGGAATAAAAAAACAGCAGAAAGAGAGAGATTTTAGCTAACCTTTTCTTATTCTGGAAGCTGGAGAGTGTCAAGAAAATGTTATGTATGTTACTGAATCACCTTTGGCATGTATAATATAGATTTTTCCATCACAATAATCATTTAGTTATAATGCTATATAAACTTTATTTTCTAATATAGAAAGATAGGAGATATAAATGCCACATACAAAAGCCAAACAGCACAAACCTATTAATTCTGTCCCTTTTTCCTCATGAATGGCCAATTCCTAGTGTAAGTAACTCAAGTTATTCTCAGCAAGTAAGGGTGAGAAGCACAGCTGACCTACTTCTATACACTATCTATAGTCAGATTTGAAGCCTTCCGTCAGTGCAACAACCTTTGAAGATAACTTTGACTGTAGTTTGGAAACAGCTTGTCTAATATCCTCAAGACTATATCGATTTGAGAAATGTGTCAGTACAATGGCTTTGTTTCTAAACCATTGGGAGTGCTCCATTATCTCAGAGAGATGCATGTGGCCATGCTCCCGAGCATGATCAACATCAATTTGGTCATCTAGGAAGGTTGCCTCAGTTATAAGGACTTTTGCTCTCAGGGCATCTGCATTTCGTGGGTCAAGAATAAAATCAGACTTTGTGTCACCTGTAAAGGCAACTTCTGGATATAGTATAGTATCTGTAATCTCAGCGCCTGATTGCTTCATTTTCATTATTTGATTACCCTTCAAGTGAGCATACTGTTTTTTCAACTTTCTCCGAACAGAGTAGATGACATAACCCTGGCTGGGTATAGCATGGTGAGTCTCAAATGGTCTGGCAACAAGGTCATTACGTATTTCAAATGTCTCCCCCAAATCAAGCGCAACCAATTCCACTTTAAGGTCGACTTGACTCATTCTACGATGGATTTGAAGTAGATCCTCAACATCATCCTTGATACATGGTGGTACAAATACAACGGGTGGCTTCAAATTATAGAGGCCACGAGTTGCTATGTACATTGGGAGACCACCGATGTGGTCGAGGTGGGCGTGGGTGATGAAGAGGTAGTCCTGGCTCACGGCGAAGAGCGGCCCGCGGCCGATGTCGAAGGCGACGGCTGCCTTCTTCGCGGCGAGCGTTTGGAACTGGGAGCGGGAGGCTGGGGCGGACGACGACGCGGGGACGAGGAGGCGGTGGGTGAGGCGGAGCGAGGGGAGGGAGAGGAGGGAGGTGGCCGCCATTTCCGGCGGCGGAGGCGGAGGCGGAGACGAACGGTGGCGACGGCGTCGTGGGGTTTTC

Coding Potentia
Explanation CPC Score
noncoding -1.03287
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0444200.1 9 18568836 A G
Osa09LNT0444200.1 9 18567685 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0444200.1 osa-miR5529 Translation 5.0 16.46 1 21
Osa09LNT0444200.1 osa-miR5532 Cleavage 5.0 14.453 1 22
Osa09LNT0444200.1 osa-miR5828 Cleavage 5.0 10.958 1 21
Osa09LNT0444200.1 osa-miR399e Translation 5.0 11.927 1 21
Osa09LNT0444200.1 osa-miR399f Translation 5.0 11.927 1 21
Osa09LNT0444200.1 osa-miR399g Translation 5.0 11.927 1 21
Osa09LNT0444200.1 osa-miR2091-3p Cleavage 5.0 17.845 1 22
Osa09LNT0444200.1 osa-miR2879 Translation 5.0 16.407 1 24
Osa09LNT0444200.1 osa-miR5508 Cleavage 4.0 18.832 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0444200.1 9 cisc(t) Resistance or Tolerance Cold tolerance nan nan
Osa09LNT0444200.1 9 qGL9 Morphological trait Seed RM257 RM242
Osa09LNT0444200.1 9 mrl9a Resistance or Tolerance Drought tolerance RM201 RM410
Osa09LNT0444200.1 9 qCCAI-9 Physiological trait Source activity RM257 RM201
Osa09LNT0444200.1 9 nan Resistance or Tolerance Other soil stress tolerance R2638 C1263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus