>Osa09LNT0444400.1

GATATATAAGGTAGTAAATATTTTACTGCACGAATACGGGTATAATGGACTTTGTTTTTACAATTGATCGTGCCATCATCGTTACAAACACATATACACCCGGTACCCAAAAAAAAAGCACAATCCAGAGGGCATCGCATCGCCTGCCACCGAAGCCTGTCATCAATTGTGGTGTGGTCGTCCTGGGCTGACCCTTTGTGTTGGCTGCCGGCGACGAACGTTGACGAAGGACATGTCGAGGATGCCATTCCAGTGGCACCATCACCACTGGCATAATCTTCTCATGTTCTTTTCTAGTTTCATCTTCAGCAGAGCAAATACCAACCACCATACCATCAAGATGTGCATCCACCTGCAAGAGTGCACACTGTAGATGCTGATGCCTGCAAAAATTAGAAGTTAATCATTTCAGTAAAATTTAGACCTTAGTCTTAGTCTGAAGATGTCTGTTCTGTCAAAAATATACAGAGAAAAAAGGGTATGTTCAACAGCGAACATATCTAGTCAGAAGTTCAGAAAAAAAGAATTCAATTGATGTGCTCCTTTGAACAACAAAAATTTAGAAAACTGCTATTCGATCGAGCTTTTTGAGTTTTCATCTATCCGAAAATTCAGAATCAGGACATGCAGTACTAATTTCAGAAAAATACGACGAATACTGTACACATGCTGTAAAAATATCACATATCTCAGAGTTTACACATCTCACAGGACATGCAGTACTAATTTCAGAAAACTACGACGAATACTGTACACATGCTGTAAAAATATGACATATCTCAGAGTTTACACATCTCACTGCATATTTTGCAGTCCTGAAAATCGTGACCAAAATTCAAAACTCATGAGCCCCATAATAACCATATAACACTAGCCTATCAGAGATATGCCTGAAAACTCAAGAACACTGTTAGTCTATAATTAGTGCTGAATTCCATGATCCAACAAAAAATAAAAATAAGAACTTCCCTACACTAGAATCATTCATGCTATTCTGTTCAGCAAGAGTTCCAGAGCTGTGCAATTGGAAGAAAGATTTAGGCCAACAAACACACAAACTAAGAACGAATCAGGTACTTTAAGCAAAAAATGATCTGAACATTCCCGCAATTGAAAGAAAAGAAGTGCAAGAACTGCTCAAGTGAAATGAGACCAGACCTTCATCCTAAAGTGTGCAGGAATTAATCATATTCCCCATACAATTCATGCCAGAATCAAAACTCTAAAACTAGGAAAAGCTGAAATTGTTTGTACTGCTAGAACTAGATTAGTGAACCAAATTTGTCACTTGAATTGCTAGTAAAGTACCTGAACTGCTCGTAAAGTAATTAAACAATGGCTCCAATATCTCTAATTAGTACCTGAAGAATCAAAGCACAAACAGCATCGCATAACATTGTTATTCAGCCAAATTAACCGAAAAAAAACCTCCAAGATTTCAGCAATTGGAAAGACAACAAGTCATTACAGCTTATTGAATAGATCCCACAACAGTCTGAGCACTCAAAAAAACTATGTCCAATTACTCAAAAAAACTATGTCCAATTAAAATAGTATGGAGAACAAACCGAATGGAGACCACGGCAAGACGACATCGCAGCACCCTAGACCACGGCAAGAGGGATGTCGGGGACGCGCGGGGCCGCTGGATACGGCGGATCTGGCGGCAAGGCTCCCAAAGGCTACACCCTTCTTCACCCCTGGCGTCCTCAAGTATTCCTCGTCGATGCAGGCTAACCTATGGAGTGCAGGGAGCAGGAGCTCGTGTCGCCCTGTAGCTTGTACATCTGGAACAGAAGAACAAGGGGCATCCACCAGCAAGGAGCTTCTCACATGATACCCATGCCATTGAAGCTTCCAGATCTCACCGAGGAGAACGATACAGCAATGGGGATCCAGCGGAGGGGTTGGCGTCGGGAGGTAGCGCGGGTGCGGTTGGTGGAGGCCTCGTCGGCAGCCTTGGCGGAGGCAGCGCGCTTCTTGCTTTTCTCGCTTGAGGGAGGGAGCCGACGACAACCGCGGAAACGAGAGCGAAACCGTCCTCGCCTCCTCGCCAGACATGGACATGCCCGTTCTTGCCGCCTAACCCATTAGATCCAGCACGCCGCCTCCTCCCTGTAGCACGCCATCGCCGTCGCCGCCGCCTCCGCTTCCTGATGCCACAGCTGCCGAGCCGGCTTCCTGCCTCGTTAGTAACACCATTACGGGAATTGAGGGGGACAGGGATGTGCTAGTGTGGTGTGGTGTGGTGTGGGGGTAGGGGTAGGGGTGTGGGTTG

Explanation	CPC Score
noncoding	-1.3213

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0444400.1	9	18781471	A	T
Osa09LNT0444400.1	9	18781646	G	A
Osa09LNT0444400.1	9	18782109	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0444400.1	osa-miR5797	Cleavage	4.5	10.567	1	21
Osa09LNT0444400.1	osa-miR5337b	Cleavage	5.0	17.602	1	21
Osa09LNT0444400.1	osa-miR395f	Translation	4.0	13.632	1	21
Osa09LNT0444400.1	osa-miR397a	Translation	4.5	9.699	1	21
Osa09LNT0444400.1	osa-miR397b	Translation	5.0	9.699	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0444400.1	9	cisc(t)	Resistance or Tolerance	Cold tolerance	nan	nan
Osa09LNT0444400.1	9	qGL9	Morphological trait	Seed	RM257	RM242
Osa09LNT0444400.1	9	mrl9a	Resistance or Tolerance	Drought tolerance	RM201	RM410
Osa09LNT0444400.1	9	nan	Resistance or Tolerance	Other soil stress tolerance	R2638	C1263
Osa09LNT0444400.1	9	qCCAI-9	Physiological trait	Source activity	RM257	RM201

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus