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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0444700.1

GTCTGACATCAAAGTCTCTTTAATTCATACTGTCAAAAAATCTTAAACACTAGGACTAAGCTACTGAATTTTAGGCTAAACCGCTAGTAAACAAACTAGGTGCTATAATATATATAACTACCTACTGCCATTAGGCAGCTTATCATTCGCACACATTCTCACAAGCCATACATACATAGTACTAGCATGTTGGTGTGCGCTAATGCAGAGATGTCACCATGGACAACTTCATCTACATGTAACAAATGGTGATCACCGATCAAAGATTTCAGAAACTTCCATCACTTGCACCCCACTCCGGCCTCGGCGGCTCTCCGCGGCGTGGAGTTCTTCCGCCGGCTCCCGTGTTGCCGGAACCCGTTCTGCTGCCGCGACGACGACGGCTCGCCGCCGTCCTTCCTCCGGCGCCGCTCAATGGCGGAGGCGCTGTTGCTGTTGCTGTTGTCGGAGCCGCGCTTCAGCTGCCGCCGCCTCTTCCTCCCCGGGTTCTGAGCTGCGGCCTTGGACGACCCCGCCTTGCTGGCTTGTGGCGCCGCCGCCGCCGCCGCCGTCGTCTTCGCGGCGTCGTCGTCGATCTTGGCGATGTCGTCGTGTTCTTCCTCCTCCTCCTCCTCCTCGGTCTTGGCGACGCTGTCGTCGTCTTCGTCCTCGTCGTCGCCGGCGGCGTGGTCGTCCTTGAGGTGGTGATGCTTCTGTTGTTGTGGCCTTCCCCTCCTCTTGTACGCCGGGATCACCTCCTCGCCGCCGCCGCCGCTGCTGCTGCCATCGTCGGCTTTCGCAGCTTCGGTGGATTTCCTGCCTTTCCCACCCCTCGGCCTTCCCATCCAGGCGAACCAAACAAACAGGGGATGAGGTGGTGGTGATGTTTAAGTTGGTAACTGTTATGATGTCTGGCAATCCGAAAACTTCCCTCGACAAGCCTTTTCCTCCGGGATTAATAAGAGGGTTTCAGTTTGCAGCAAAGAGATCTTCAGAGACTAGCTAGCTGAGCTATTCTACGATTGCTATCAGGCAAGAACCACCAACCAGGACATGAACAAGAGAGAGAGAAAGAACAGAGGGGATTCAGATATCAAGAAGAAGGCGGCGAGATCGAGTCGAGAGCTTGAGATCGTGCACAAGACTACACGAGTTTGTGCACACAGAAAAGAGAGGAACCAAGAGACAGCAGGAAGAAGAACTGGCTACACCATTTCTGCAGATAGAGAGAGAGAGAGAGAGAGACTGTAAAGAGATAGGAGAAGTAGAAAAGATGGAGATGGGAGTTTGCTTGCTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.270854
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0444700.1 9 18944515 A C
Osa09LNT0444700.1 9 18944640 G A
Osa09LNT0444700.1 9 18945217 G T
Osa09LNT0444700.1 9 18945713 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0444700.1 osa-miR5819 Cleavage 5.0 16.087 1 21
Osa09LNT0444700.1 osa-miR156b-3p Cleavage 5.0 15.056 1 21
Osa09LNT0444700.1 osa-miR2097-5p Translation 5.0 22.175 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0444700.1 9 mrl9a Resistance or Tolerance Drought tolerance RM201 RM410
Osa09LNT0444700.1 9 qCCAI-9 Physiological trait Source activity RM257 RM201
Osa09LNT0444700.1 9 cisc(t) Resistance or Tolerance Cold tolerance nan nan
Osa09LNT0444700.1 9 nan Resistance or Tolerance Other soil stress tolerance R2638 C1263
Osa09LNT0444700.1 9 qGL9 Morphological trait Seed RM257 RM242
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus