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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0444900.1

CAAGAAATCAAGAATACGTGGGTCGCGGACGGTGGCGTGGACGGCGTAGCCGCGGGAGAGGAGGAGCTTGACGAGCCACGAGCCGATGAACCCGCCGGCGCCGGTGACGCACACGAGGCGCCGCGGCGGCGGCGGAGGAGGCGTCATCTCCGGTTGCCACCACTGCACCTCCGTATGCAGCGTCAGCTGCAGGCTGCAGCAAATTAAGTCCACTGCTGCAACTGTGCAAGCGTTTGTTTACTCGGC

Coding Potentia
Explanation CPC Score
noncoding -1.09805
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0444900.1 osa-miR1847.1 Cleavage 3.5 23.939 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0444900.1 9 cisc(t) Resistance or Tolerance Cold tolerance nan nan
Osa09LNT0444900.1 9 qGL9 Morphological trait Seed RM257 RM242
Osa09LNT0444900.1 9 mrl9a Resistance or Tolerance Drought tolerance RM201 RM410
Osa09LNT0444900.1 9 qCCAI-9 Physiological trait Source activity RM257 RM201
Osa09LNT0444900.1 9 nan Resistance or Tolerance Other soil stress tolerance R2638 C1263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus