>Osa09LNT0445000.1

AAAAATCGGTATTAACTGTAGCTATGATCAACTTTTTGTAAGTATACATGATACCGGCCTCCTAAGTATCAGTACAAGATACATAAAAAAAACATGCATTAACTTTTTTTACAAGGTGCATCCATACTAGTAAATGGGGAAGATTAATTAGCTGAGAATTGGGACCAAGGCCATCTTCAGTTCATTCCTGGACAGCGAAATAGGGAAGCCGGCAAGGTCGCCCATCTAGAAGGCCTGCCTTCTCAAAGAACTCGATGCTGTCCGCAAGTGTCTCCTCCCGTTTCCTTGGGTTCCAGCCCAGATTCTTCAGTTTCTCTGATGTCACTTCGACCTTGTAATCCACATCAACCATCTTGTCTGCATAATTGTAGTTAGGGTACATGTTCTTCATCAGATCCAATAAATGTTTCAGGTCCATCTGTTCTAGAGTGCATAAGTACCGCTCAGATGGCCCTGCCTTGTGGTATGCTAGAAGTAAAGCATCAGCAACATCACGGACATCTACCATGGGCCAGAATTTGTTGTTCATAACGTGAGGGCCGTCTCCTCCTGCATTCCAATCAAACTAATTAATCTTAAAACCAAAGTCCAAGATTTAAAATCAACTTGGAAGGTTGAAGTATTTATACTTGCTCTTAGATCCTTGGTGCTTCCCCGTTTAAATTATTTGTCGTTTTAGCTATGTCCAAAGTCAAATATTTTTAACTTTGACGATTATTTTCTTTAGAAGTTTATATAGTTTTCAGCATATAAAATTATGTATTATGAAAGTATTTCTTATGGTGAATCTAAATACATAAATATTATGATATTTTTAAACTATATAAATTTCTAAAAAATTATGATTAAAGTTAAAAATGTTTGACTCATGATAAAGATAAAACGATAAATAATTTAAAACGGATGAAATAGTTAGCAGCGGGGAGGGAATGCTATAGAAACTATCATGTATAAGAATCTGTCCCATGGAGATTATGGAGTTATGGATTTTGCGTTCCATGAATTTTCAAACTACAATTTCTCTAAAAATTTCTGTATCTGCTATTTTTTAGTTTGCAACATATAAAAGTTTAATTCGCCCCTTTTTACATATTTGACCATAATATGTCCAATCATCTGTAAAGAACAAAGAATTAAAATGGTGAACCCTTAATCATATAGAGGAGCACTTTGCTGCTTGTGTTGATTTCCACTGTCTGCAACATTGGGCCAAAAACAATTCCAGGACAAATCGTAAGTACATGAAGCCCATTTTTCTTTCCGTATTCCAGGGCCATCTCTTCAGCTTCGATTTTGGCAACAGAGTACCAATCCTCATTTTCAATGCAGAGCTTCTTGTCTGACCAGGAAGTCTCATCTTTCGGCATATCTTGAGGCCAGCTCGGGTTAAGGCAAACAGTAGCAATGGAGGAGGCCACGACGAGTTTCTGAACGCTCGCAGCTGAGCAAGCCTCGAGTACATTTCTGGTGCCTTCCACGGTAGGAGCCATCATCTCCTTCTGTGGATCAACGATCTTTTCTTCCGGCACCGGAGTGGCCAGATGGAAGACACCCTCGCAGCCGGCGAACGCCGCCGTCAGTGAGCCGCAGTCGAGCACGTCGGCCTCGAACAGTTGCAGATTCTCCGGAGCATTCTCCAGTTGCTTCAGAAACGCGTTCTTGGGATCGTCTGGGTCACGGACCGTGGCATGGACGGCGTAGCCGCGGGAGAGGAGGAGCTCGACGAGCCACGAGCCGACGAACCCGCCGGCGCCGGTGACGCACACGACGCGCCGCCGCGGCGGAGGCGGCGCCATCTCCGGTTGCTCCTGCTGCCCCGCCATGTCAAAATCTAGGTCGCTTCGTACGCAGGCACGTACTGAGTTTGGTT

Explanation	CPC Score
noncoding	-1.23308

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0445000.1	9	19021545	T	C
Osa09LNT0445000.1	9	19022368	G	T
Osa09LNT0445000.1	9	19023088	A	G
Osa09LNT0445000.1	9	19023082	T	C
Osa09LNT0445000.1	9	19023172	A	G
Osa09LNT0445000.1	9	19023211	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa09LNT0445000.1	DTM_#DNAt_MULE_japo_Os0312	Chr9	-	19022943	19023304	361

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0445000.1	osa-miR5802	Cleavage	4.0	11.952	1	24
Osa09LNT0445000.1	osa-miR5815	Cleavage	4.0	21.581	1	24
Osa09LNT0445000.1	osa-miR5337b	Cleavage	2.5	14.427	1	21
Osa09LNT0445000.1	osa-miR437	Cleavage	2.5	12.415	1	21
Osa09LNT0445000.1	osa-miR1425-5p	Translation	4.5	14.045	1	21
Osa09LNT0445000.1	osa-miR1430	Cleavage	4.0	17.534	1	21
Osa09LNT0445000.1	osa-miR5150-3p	Cleavage	4.0	19.311	1	24
Osa09LNT0445000.1	osa-miR5337a	Cleavage	4.0	7.805	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0445000.1	9	mrl9a	Resistance or Tolerance	Drought tolerance	RM201	RM410
Osa09LNT0445000.1	9	qCCAI-9	Physiological trait	Source activity	RM257	RM201
Osa09LNT0445000.1	9	nan	Resistance or Tolerance	Other soil stress tolerance	R2638	C1263
Osa09LNT0445000.1	9	cisc(t)	Resistance or Tolerance	Cold tolerance	nan	nan
Osa09LNT0445000.1	9	qGL9	Morphological trait	Seed	RM257	RM242

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus