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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0445800.1

GCTGCACTGCACACGGACGGACACCGCAACCAAACACCGACGACTGCGCCATCGACGCGGTCCGCTGCCGCACGACGCACGCACGCACGACAGCAGGAAGGGCGACGACTTGATCACGCGTCGGTGGATGTTGTCTCACGCGTCTACGTGGGGGCGAGTGGCAACGTTGCTGGGCTTGTAGGCGAGATCGATTGGCCTTCTGTTTGTCCGGCCTGTTAAGGGTTTTGAGGACATATGGTCTTTCTTGGAAAAAAGTACACCGGAGGTCCTCCATCTTGTCACCGAATTACAAAATCATCCCTCAACCCAAAAACTGGTGCAAAATAGATCCCTCGGTGGTATTGTTACCGGTTTTGGCTGACTTGGCGCCTACGTGGCTCCTTTGACTAGGTGTTCATACTACGTGGCGATTACGTGGCAGTTTCATCCAAAAATAATAATAATAAATAGGCTGGGCCCACTGGTCAGGTCTCCTTCTTCCTTTTCTCTCCTCTAGCCGTCGTCGCCCTCCTCGCCGTTACGGTCGCCGCGCAGGCCCTGGAGCGGAGCCATCTTGTGCGCCGGGATGGGGGTCACTCGCAGGGCGAGGTCCCCGGCCACCACCCCCGCGCCGGTCTCTACCCCGCTCAGCAGTAGCGAGGAGGAGGGACGCCCGCTGCCGATGAACCAATTTTGAACCTTCTTCATTTCCATATAACAGAGCTGCTGCTGCAAGCACATCCATGCTGTTATGTACTGGCAAATTTCCCTTCATGGGCACTTTCGTGGGCTTGTTAAGCACAAGTATAGCAGAATCCTTGTGGATGACAGGCCTTCTCAATCTCATCTCTAATCTCGCCCTCTGCCACTGACACAGGAAGGTGAATTCTCATGCCAGGCTCCATCACATCATTATGCTTGATCTGCAACAAACTTCTTGAGATGATGCTTCTGGCTCTTAGTAGTTTCAACTGAAACCTCATGATCAGAGCACTCGGAATGAACCTGGTAAACGGGGAACAGATAGTTTCACTTCATACAAAAAAGGAATCCCTAAATGTAGAGCCAACTGCGTATGACATCAAACTGAGAGAAAAGATTGCAAGAGAAAAACTGCGGCGCCGTCCTCCTCCTCTTCCACATCGCCCCGTCGACGCCCCGCAGCCCGGCGCGGGGGAGGTCCTGGCAGTCGACGTCGAGGCCGCGGAGGGACTTGACGATGGGGGCGAGGTCAACGGCGATGGGGGCGACGGAGGCGCCGCTCTCCTCGAAGGCGGCCGCGCCGCCGCCGGAGTACGGAGGCGCCGCTCTCCTCCGACCCCGCCGGCGAGCTCGAGGCCGTCGAGCTCCCCTCCTCCCTCGAGGTGCTCCAGGAGCGGTTGCTTCCCCCGCGGCGCCGACGTCTTCCCCCACCTCTGCTCGCCTGCAGTCCAGTACAGCCTCGCGCTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.870276
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0445800.1 9 19439436 T C
Osa09LNT0445800.1 9 19439715 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0445800.1 osa-miR5819 Cleavage 4.5 14.665 1 21
Osa09LNT0445800.1 osa-miR6256 Translation 5.0 20.416 1 22
Osa09LNT0445800.1 osa-miR7695-3p Cleavage 4.0 15.512 1 21
Osa09LNT0445800.1 osa-miR169q Cleavage 5.0 21.627 1 21
Osa09LNT0445800.1 osa-miR5148a Cleavage 5.0 15.899 1 24
Osa09LNT0445800.1 osa-miR5148b Cleavage 5.0 15.899 1 24
Osa09LNT0445800.1 osa-miR5148c Cleavage 5.0 15.899 1 24
Osa09LNT0445800.1 osa-miR5153 Cleavage 5.0 13.115 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0445800.1 9 mrl9a Resistance or Tolerance Drought tolerance RM201 RM410
Osa09LNT0445800.1 9 Symptoms Resistance or Tolerance Other disease resistance RZ228 RG667
Osa09LNT0445800.1 9 Ta1 Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0445800.1 9 qCCAI-9 Physiological trait Source activity RM257 RM201
Osa09LNT0445800.1 9 ta9 Morphological trait Culm/leaf RZ228 RZ12
Osa09LNT0445800.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0445800.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0445800.1 9 nan Resistance or Tolerance Other soil stress tolerance R2638 C1263
Osa09LNT0445800.1 9 cisc(t) Resistance or Tolerance Cold tolerance nan nan
Osa09LNT0445800.1 9 qGL9 Morphological trait Seed RM257 RM242
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus