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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0446100.1

CAAATTCGTTCGACCTGCATGATTGCATCCTTCAACCCTCCTGTTATTCCGAGTTCGTTCATCACGGGCCATTTCATCTGCAGCTGATGAGCTCCTGGTGATGCATCTACATACAAACAACAGTAGCCTTGGATGAACATGCGGGTCTAGGTGGTCATTTTGCCGTGACACAATTCCACAGCAAAATGGTACACGTTATGGGAGAACTCCTGTTCCTCTGAATATATTAGATTGGAGGATGCTGCTGCTGCTGCCAGAAGTTCCTTTGGTACATCCAATGAGCCTTAACTATCAGAGTTTGGAAGGTAAATACGGTGGAAATTGTTCGCCCTCAGACTCTTTCTGCAAGTAGGGCATTTCTTCTGAATCTGGATGGCTTGCTTGATGCATGTCGTGCAGAAGATATGGCCGCAAATTGTTGTGGAGGGCTCCTCCAACTTGTTCCAACACACCGGACAGTTAAAAACCGGTTCCTTTGCCTTAGGAGGCTCATTGCTAGTCTTCAAGCTGGACCCTTCTCCCCTTTCTGGAGAGAGGCAGTGTATAACAGGTGCAACCCTTTGACGTTTGTTCCCTTCCCGGCTAGCATCTACTTCCAGATCAACTACTGCCACAGGCTGCCTCCTAGTTCTCCGGTTCCTTCTCGGAGGAGGCACTTGCGAAGCGGACAATGTCTGCACTTCATCATCCAGAGCTTCCACATCAATGGGGGAGGCGCGCGCACCAGTGGAGGTCGGCACCGCGCGACGGCTTCCAACCACTGGGGAGGAGATCGCGTCCAGGTTCACAACGACTTTATCACCAGGACCATCTTGTGATTGCCTCCTTGGGGCACGCCGAGTGCCGCTGACAGTACTCATGCTAACTTTGGAGCTGAATCAGTGGCACTCAACTCTGAAATCAACCTGCTCGAATCCTCGATCCAGCCGCGCGGCTCGATGAGGAGGAGACCGCGATTTTTTTCTTCTTTTTTTTTCTTTTTTTTTTATCTTGACCGCGATTTATTTCAATTTCAACACGAGTGAAGAGAGAAGAAGAG

Coding Potentia
Explanation CPC Score
noncoding -1.0886
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0446100.1 9 19503810 G T
Osa09LNT0446100.1 9 19504293 T G
Osa09LNT0446100.1 9 19504385 C T
Osa09LNT0446100.1 9 19504820 T A
Osa09LNT0446100.1 9 19506172 G T
Osa09LNT0446100.1 9 19506584 G A
Osa09LNT0446100.1 9 19506755 G C
Osa09LNT0446100.1 9 19506914 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0446100.1 osa-miR160f-3p Translation 4.0 23.595 1 21
Osa09LNT0446100.1 osa-miR408-3p Cleavage 4.0 21.627 1 21
Osa09LNT0446100.1 osa-miR2093-3p Cleavage 5.0 21.698 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0446100.1 9 nan Resistance or Tolerance Other soil stress tolerance R2638 C1263
Osa09LNT0446100.1 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0446100.1 9 gy9 Morphological trait Seed RM242 RM215
Osa09LNT0446100.1 9 qCCAI-9 Physiological trait Source activity RM257 RM201
Osa09LNT0446100.1 9 ta9 Morphological trait Culm/leaf RZ228 RZ12
Osa09LNT0446100.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0446100.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0446100.1 9 mrl9a Resistance or Tolerance Drought tolerance RM201 RM410
Osa09LNT0446100.1 9 Symptoms Resistance or Tolerance Other disease resistance RZ228 RG667
Osa09LNT0446100.1 9 Ta1 Morphological trait Culm/leaf RZ228 RG667
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus