>Osa09LNT0446200.1

CGAGTTCTTAAGGCCACTCCACAAACGTAATGCAGTCAGCGTCAAATCAAAGAATGAATGCATATTACATTGAACATCAGATGGGACGAACTAAAATTCATCTTTGTGCAAAATTACACCTGAAAAATGGATGACAAAATAATATTGCATCCCAGAATACAATGAAGGCTATACTAATGATTTAGCGAGATAAACCAAGCAACCTCCTAGATGCTACAGCAAAAGTTGCTTCAAAATTTAACCATATCTTGAGCTACACCGAGCCCTCTTTTGTATTGATTGTTCTTTTCATGTTAGAAAGCTGAGAAGTATTTCAGTGATCACTGGTCAGCTGCAGTGCAAAACAATCTAAAATATGGACTTGTCTGTATCCTCAGAAAATTTGCCATATAGATCTTCAGGTTCTGCAGTGGCGCGTGGAATCACCTCTAGTCTCTGCTTCTTAGTTAAAGTTGTTCCACTCGAACTAGCAGTGGCTTTCGGATTTCCTACTGCGATGAATGCAACTCTCTTCTTTGTCTCAGGCTTGACATATAGATCTTCAGGTTCTGCAGTGGCGCGTGGAATCACATCTAGTCTCTGCTTCTTAGTTAAAGTTGTTCCAATCGAACTAGCAGTGGCTTTCGGATTTCCAACTGCAATGAATGCAACTCTCTTCTTTGTCTCAGGCTTGACATCAGGGCATGGAGTTGAATGCACATGAGTAGCAACTGCATCTGAAAGAGAATTAGAATTGTTGTCATTCACCAATTGCCTCCTACTTTGAGAATCTTCATCACGATGGCAATGGGTTTTCTCTGGCTGGTTTGCTAAGGTGGCATCTGGTAGCTTCATGGGAGAGTTCAATCCTTCAGCATTTTCCATATCTTCAGAAACTTGTCCAAGAGTTTCATACAGGACTGCTGATTCGGAAGCACATGACTTTTGATCCTCAGCTTGGGTTTTCTCACAGTTACCTTTTGTATTTTCATGCAAAACAAATTTATCTTTCACCCAAACACATTCCAGAAAAGTACGGGCATCATTGCTTGAGGGATAGTACTCTCTGAAAGCCTGCGCTCCACCAATACTAATCTTAACAGATTGCTTCCTATCAATAAGATCAGAAGCCTTGTTGTAAACTGAGACAACATCAAGTAGCATCTGTTGAACCAGAGCCCTCACTCTTGCTAGCAAAGCAAGAATCGCTGTGCAAAGATCAACAAAAAATGATCTTGCAAGTAAAAACGAGATCTGACTATACCGCAGGTTAAGGAACTATCGATTGTTACCAAAACAGGGAAATGAACATATCTATTTGAACTATATGAAAGTAAAAGAATGGGCAAAGATACTAGTACAAATATGAGGCACGCGTTGCACAAGACAAACCAGTTGTAAGTGTACAGTTTAATATATTATGCATCCAGTCAAAAAAAATATTTCTATGCACAAGAGAATACAAGGAACAAAGAAACAAAAAAAAAGGCAAAGGATACACTGCTCCCATCATAACAGGTTCAGCCATCTCTGATAACAAGCGTGCGACACCCAAAAGCCTCTCATGGTGACAATGGTTTGCACCAGGCTTCTTCTTACTCTGCCTGTTGACGGCGAGGATGGTGTTGGCCGGCTTGCGGGAGGCGAGGACGGGGAAGACGGCGGTGAGGACGTCCCCGAGGCCGGCGGCGAGGAGCAGCCTCACGTCGCGCCTCACCTTGAGGAGGTACTGGAAGTAGGCGGCGCCGCGGTGCTGGTTCCGGTGCTTGTACACCAGCCGCTCCAGCACCCCGGCCTCCTGCTGCAGGCTCCGCAGCGCCCCCCGCAGCCGCCGCTCCTCCTCCTCCTCCTCCACCACCACCACCTTCCCTTCCCCTTCCTTCCGCTCCGCCATGGCGGCTCGCCGATGCGCCCTGCGAGCGAGAGCACGGCGGCGGC

Explanation	CPC Score
noncoding (weak)	-0.698858

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0446200.1	9	19510256	A	G
Osa09LNT0446200.1	9	19510478	A	G
Osa09LNT0446200.1	9	19510683	A	G
Osa09LNT0446200.1	9	19511562	A	G
Osa09LNT0446200.1	9	19511592	T	A
Osa09LNT0446200.1	9	19512636	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0446200.1	osa-miR168b	Translation	3.5	14.229	1	21
Osa09LNT0446200.1	osa-miR1429-5p	Translation	4.0	10.719	1	21
Osa09LNT0446200.1	osa-miR1320-3p	Translation	4.0	14.674	1	21
Osa09LNT0446200.1	osa-miR2864.2	Cleavage	5.0	20.825	1	21
Osa09LNT0446200.1	osa-miR2922	Cleavage	4.5	21.544	1	20
Osa09LNT0446200.1	osa-miR5492	Cleavage	5.0	15.823	1	21
Osa09LNT0446200.1	osa-miR5499	Cleavage	5.0	15.823	1	21
Osa09LNT0446200.1	osa-miR5506	Cleavage	4.5	16.013	1	21
Osa09LNT0446200.1	osa-miR5508	Translation	5.0	10.97	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0446200.1	9	nan	Resistance or Tolerance	Other soil stress tolerance	R2638	C1263
Osa09LNT0446200.1	9	yldp9.1	Morphological trait	Seed	RM242	RM205
Osa09LNT0446200.1	9	gy9	Morphological trait	Seed	RM242	RM215
Osa09LNT0446200.1	9	qCCAI-9	Physiological trait	Source activity	RM257	RM201
Osa09LNT0446200.1	9	Ta	Morphological trait	Culm/leaf	RZ228	RG667
Osa09LNT0446200.1	9	Ta	Morphological trait	Culm/leaf	RZ228	RG667
Osa09LNT0446200.1	9	mrl9a	Resistance or Tolerance	Drought tolerance	RM201	RM410
Osa09LNT0446200.1	9	Symptoms	Resistance or Tolerance	Other disease resistance	RZ228	RG667
Osa09LNT0446200.1	9	Ta1	Morphological trait	Culm/leaf	RZ228	RG667
Osa09LNT0446200.1	9	ta9	Morphological trait	Culm/leaf	RZ228	RZ12

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus