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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0446300.1

TAACTACCAAATATTAATACAATTGTATTTATAAGATAATGTTTAGTTTGCTACCCTACTAAAGTTTAGTGGGGTTGAAAGTGGCAACAAAATTACAAACAGGTCCTACATAACTTGCCACATTTTCAGGGGCTGCAAAAACTTCTGAGTGGAATAATAACCATACAACAATCCCTCAAAAAGTCATTCAAAAAAAACTTGTCATTAAAAAAAAACAATCCCTCAAAAAAAAAAATACAACAATACAAGATCATGGATGTGATATCGTATGTATTCTACTACTCCAGGAAACAAGTTTCAGTTCAGGCTATTCACAAAAAGTGTTGGTGATGCAGCATCTCCATTCCCCCAGCAATAATCCCCACTGAACTGACGTTGTTGAGGATGTCGCTGGATTTCAGACATCGCAAGCACATTTTCAGCCGCCGTCGCCGCCACCGACGTTGAAGATGTCAGTGGCCCTGACGAAGCGCCCTTTCACCCGCGTCCTCGTGTCGGCTCTCATCTTCCTCGACTCGTACCGGATGTGCTTGTCATACCTGCGAGTCTTTCTCTTTTCTCTATACCGTTGCATCGCGTTGTCCCTGTTCATGGCGATCGTTTTGCTGTCGATCTTCAGGGAATTCCTCTGATCAGCTCCAGTTACAGTTTGATCAGTGATACAGTTCTCCCCGGCAAGAACTGCTGCAACTTCTTCAGGAGAAGAGTTCAGAGTTCTATCGACGTCAACGATCCTCGAAGATGATGGCCCGTCATTTGTCAATCCGTGTTGCTCGTTCTTGTGTCGCCTGTTGCCGGATGTGGCAGTGCTCAGCTGTTTTGGAGTCAACTGGTAGATATTGGCCGACACAATATCTTCCGTGGCAAAAGAGTATGTCGAGTCATAAATATATTGAAGATCTTTCCTTGAGCTAGAGGAAACTTCCTCAATCATGTCATTATAACTTTTGATCATAAAGCCTCCATCTTTTGGGCCGAAATGAAGTTCAAGTGCAGAGTGCTCATCATGGTCCCTTGATTTTCCTAGATTAAAATCCCATATCTGGCATGGCGGATCGGAGGGCGCGGTGCGCTGCCACACGAGTTCGTTGTCGTCGGTGAACTGCTCGCCGTTGCCGACATCGCCGCAGCCCGCCGCCTCCGTCACCGGCGTGGACTTGTACGGCAATGTGGCCCTTTGCGCCGCCGCCGCTGCCGCAGCCTCATGGCGGATTGCAGCGGCAGAGCCCCGGCGAGCTGATGGGGAGATCGATCCCGAGTTCGCCTGCGCCGGCGCGGATTCCATCTCACGCCGCGCCAGCTCGGCGAGCTGGTGGCAGAGCGAGTCCCCTTTGAGCCGCCGTCCGCGTCCGCCGGCGGCGACCTCCGGCGGCGGGTCGCAGGGCACGTACATGTCCCGCAGCACGCGATCCGCCGCCAGCATTGGGTAACCGGCCTCGGGGAAGAACGGATCCTCCTCGAATTCATCTCTTCCGCCGCCGCCGCCGAGGTCGAGCCCCCACGACGCGGCGAGCTCGGCGGCCCCGGGGCATCCGGAGAACCCCACCACGGGCACCCTCGCCGCCTCCGCACCGTCGTCGTCGGCGCACCCGGCGCAAAGGAACCTGGCCTCCCCGCCGCCGCCGCATCC

Coding Potentia
Explanation CPC Score
noncoding -1.06828
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0446300.1 9 19783542 G A
Osa09LNT0446300.1 9 19783734 G A
Osa09LNT0446300.1 9 19784451 T G
Osa09LNT0446300.1 9 19785690 C T
Osa09LNT0446300.1 9 19785757 G A
Osa09LNT0446300.1 9 19784960 T C
Osa09LNT0446300.1 9 19784515 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0446300.1 osa-miR5807 Cleavage 5.0 12.864 1 24
Osa09LNT0446300.1 osa-miR7692-3p Cleavage 5.0 19.778 1 24
Osa09LNT0446300.1 osa-miR164c Translation 4.5 14.436 1 21
Osa09LNT0446300.1 osa-miR166l-5p Translation 4.0 10.577 1 21
Osa09LNT0446300.1 osa-miR2873a Cleavage 4.0 16.926 1 24
Osa09LNT0446300.1 osa-miR3981-3p Cleavage 5.0 15.0 1 21
Osa09LNT0446300.1 osa-miR5490 Translation 4.0 16.127 1 21
Osa09LNT0446300.1 osa-miR5505 Translation 5.0 21.545 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0446300.1 9 Symptoms Resistance or Tolerance Other disease resistance RZ228 RG667
Osa09LNT0446300.1 9 Ta1 Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0446300.1 9 qCCAI-9 Physiological trait Source activity RM257 RM201
Osa09LNT0446300.1 9 ta9 Morphological trait Culm/leaf RZ228 RZ12
Osa09LNT0446300.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0446300.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0446300.1 9 nan Resistance or Tolerance Other soil stress tolerance R2638 C1263
Osa09LNT0446300.1 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0446300.1 9 gy9 Morphological trait Seed RM242 RM215
Osa09LNT0446300.1 9 mrl9a Resistance or Tolerance Drought tolerance RM201 RM410
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus