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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0446900.1

AGTAGAAACATAGTTGTGATTCGCAACATCTGTGGTACAGACTACAGAGGATATGTTCGTCGTTGAACATTGCAGAACAAATTATCTCTCTGCTATGTTGCAGGCACAGATCTATATATGCGATCATCAATTTATCATGATATATATCTCTATTCATCGTTGCCTCCTTGATTCCACCTGAATGCCGAATGAACTGAAAGAAGCTTCACCAACTTGGACCATTTTACAGGTGGTATAGATGCAACTTGTAGGATCAGTGAATGCCAACTTTGCAGGTATCATATAGTCAAAGGCTTGCTGATCTGAACTACAAAACAATGAGTCCTGATTGGCTATGGAAAACCTCGATCTCCATCCGAACTGATGCCCAGACATGATTGCATTGCTTGATCTTCTCATTCATGTGTGCCAGAAATGATTTCGCCCATGGTTCTTCATCACGTTTGGTGCTCATGTCACAAGGAACTGAAAAACTCATCAGTTCCTGTTCTGACTGTTTGGCAGCTGATTGACGACATCTCACAGCATATATCCTATAGATATGCAGAGAGTGCTTGGAGAGATTTTGTGTGGCAGTTTCCGCACTTTCATTGCAAAACAAATATGTTACAGGATAACCCAAAAGCCACCCATTCAAAGAAGGCAATGCAATTTGGGCACTCTCAAGGAAGGTGCTCAGATCAATAACCAGTGATGTTCCGTCAGCAATCCGAAAGCCAAAATTATCCATAGTGGTTCCCTCTGGAATTTCTGACATCTGCCCTTTTGCTTCAGGTTGTATAATAGGCAGATCTACATCTGCATCTACAGGGAAGTTGGCTGAAAACAGGTCTTGGATGGATAAAAACTCATGCAGAGCACCATTCTCTTCGGTTTCTGAAAGCAGCTGCACCAAGACAGCATTCAGTAATACAACAAAGGAAAGAAGAATAGGACATAGGACAGAGAAAATAGAAAGACAGGATCTGAGAAGGCAAAGACTTTGCTACAGCTTTTCTCTAGGTCCACAAAAGCGAGCTTGTGCTGTGACCTTGCACTTGGTGAAGCATGCTCAGCAAGACCCTTTGCATGAATCAAGTAAAGCATATCTTTAATAACCATCAGCCTTAGTGGACTCAACATGCTTGACTCCTGCCGAGCATGATGCAGCAGGGAGCAGAGATTGTCCTGTAGTTCAGGCATTGTGCCACCGTAATCCATCAGTACCACAGGCCGCAACCCACTGCAGAGGAACAGTATATCGTTGAGGAGGCGGCGCTTGGAGTGGGGCCGGAGGCGCCACCGGATGCGCGTGGCGATCGCCTCCACCACCCGGAGCATCTCCTCGTACTCCTCCGCCGTCGCCGCCGCCGCCGCCGCCATCTCCACCTCCGCCGCCGCGTCCAACTCCACCTTCACAA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.997712
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0446900.1 9 20071948 T C
Osa09LNT0446900.1 9 20072668 A G
Osa09LNT0446900.1 9 20073065 G A
Osa09LNT0446900.1 9 20073448 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0446900.1 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0446900.1 9 gy9 Morphological trait Seed RM242 RM215
Osa09LNT0446900.1 9 mrl9a Resistance or Tolerance Drought tolerance RM201 RM410
Osa09LNT0446900.1 9 qCCAI-9 Physiological trait Source activity RM257 RM201
Osa09LNT0446900.1 9 Ta1 Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0446900.1 9 Symptoms Resistance or Tolerance Other disease resistance RZ228 RG667
Osa09LNT0446900.1 9 ta9 Morphological trait Culm/leaf RZ228 RZ12
Osa09LNT0446900.1 9 nan Resistance or Tolerance Other soil stress tolerance R2638 C1263
Osa09LNT0446900.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0446900.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus