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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0447200.1

CCTCAACATGAAGAGTGTTCATTCAGCATTGGTAAAACCCCATAAACACAAACATTAACCGAGAAAAAAACATTCAAGTTAAGTGTGCTCTGGATAGAATGGTGATATTTCTGTTTCACTTCTTTGCAAGGCTTCCAAGCCTTTGTCCATGCTCCTTCTCAGCAACTGCTCTTCTCCTTCCATTTGTAGTAGCTTCAGTGGCACGGCTGCCATTGCCAGGAGCAGGCTCACCTCCAGTTCTTCTCCTTCCTTTCCCTGCAACTTTGTTAAGCTCATTGTTGCTACCCACTGTTGCAGCAGGTGGGCATGGCATTCTTCTTGCTGTGCCAGCATCCATTTTCAGATCCTTCATACCAATTGCGGGATCTTTGGACCGAGCTTTCGGTGCAGTCGCTGTGGTTTTCTTCAGCGGCTTGTCGGGGATTCCTAGTTTGGCCATTTTGTTTACTGCATTTGTGCTGCCTGGGAATTCAGGCTTCTTGCTGGCTGAGGTTTTCTTGGCTGCTTTGCTGGCTGCTGTACTTTTAGTTGTTGGAGCTGCAAGTTGTTGTATGTTCTTCAGAGGAGTGTAGCTTGATCTCTTGTCCATTTTGTAAGCTGTGGTCACTTCAGAGAGAGCAGGATCTCCTTTGGTGAAGTTTTTCTTTGATGAAGAGCTACTGGATCTTGCCGTCGGAGTAGCAGACTTTGAGGAGCTGGAGGTAGGCGATTCAGTTCTTGTTGATGTGCTTGTTGGTTCAGGCTTGATTGAGAACCTTGAAGTTTTAACTGGCTGAAGGATAGGCAATTCTCTCTGAAAAACCATTTGAGAGGAATTAGCTTCCATCTCGAGGGAAGGGAACAGTGGAGTAGCTGGAGGAGTCTTGAGCCAGTCGTAATCGTGCTTTCCACCATCTGGTAGGAGGTAATCTTTCTTGCCTGATGGTAACTTGAACATACGACTGGTTCCTTGAATTGCTTCGAACTCCACTGAGTACATTGGTTCAAGGAGGTTCACATCCTTCTCCTTCTCATGCCTGTACAGCTCACCAAAGAGAACCAAGCTCTCGTCTTCGTTTTTCTGAGCCGGAACAGCTGATAATCCCTTAGCCATGCCAGTAACTCTCTTCAGGCGATCCATACTTCAGGAAAGGCTGCAGAAACAATGGAGGTGGTCAGATGCAGGTAGAGCAGAGCATATATCACCCTATGGCAGAAAAGGTTACCTGAATACTCCAAGGACAAAAATGTGCTGGCAATCCTGAAACCATCCCTGGAGCTAAACACAATGCATACAAATGTAACAAAAATGTCAGTGAAAAGGACAGGCACATGAAACCAAACAGAAA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.331699
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0447200.1 9 20242064 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0447200.1 osa-miR399h Cleavage 4.5 23.531 1 21
Osa09LNT0447200.1 osa-miR399i Cleavage 5.0 23.531 1 21
Osa09LNT0447200.1 osa-miR169f.2 Cleavage 5.0 16.177 1 21
Osa09LNT0447200.1 osa-miR166i-3p Cleavage 5.0 17.495 1 21
Osa09LNT0447200.1 osa-miR1425-3p Cleavage 4.0 20.665 1 21
Osa09LNT0447200.1 osa-miR1430 Translation 5.0 22.087 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0447200.1 9 mrl9a Resistance or Tolerance Drought tolerance RM201 RM410
Osa09LNT0447200.1 9 Symptoms Resistance or Tolerance Other disease resistance RZ228 RG667
Osa09LNT0447200.1 9 Ta1 Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0447200.1 9 qCCAI-9 Physiological trait Source activity RM257 RM201
Osa09LNT0447200.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0447200.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0447200.1 9 nan Resistance or Tolerance Drought tolerance RZ12 RG667
Osa09LNT0447200.1 9 nan Resistance or Tolerance Drought tolerance RZ12 RM201
Osa09LNT0447200.1 9 nan Resistance or Tolerance Other soil stress tolerance R2638 C1263
Osa09LNT0447200.1 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0447200.1 9 gy9 Morphological trait Seed RM242 RM215
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus