>Osa09LNT0447600.1

TTAAGTCGAGAACTCAGAAATTGAGGATGAAATTGCTCCATGAAAGCTTTTGATACACTACCAGAAGAACAACATTGGTGCACAGGGTGTCAAGGATCATGAGCCACAAAAGCTATCTGTATGCTAAATTAACAATTTACAAGTGTAACATGCTTCTAGAGGGACAAGAGGAAATAAAAATCACTTACCCCATGAACTACATATTACAGGATCTGTAAAAAACTCAAAAGCAAGCACACAAGTGGTGCATAAAAACAAAGCTATGCGGTATCGATGAGAATCAGCTGAACTTGATCGAAGAACCTACACATATATCCGAGATGCTTTCTTCTTCGCGAGGTATTGTGGTTTTACAGCCACGGAATCGACACAGAGTCCACCTTTTGTGTGTGTGCAATCTATTTGAACCATTGCAAATTGGATCTTCACTAGTTCATTAGAGCTCTTCACGACGAAATCGCCGACGTGGTGATTGATCCAGACACCAGGATCAGTTAAGTAGCACTTGGACTGAGCTTGCTGTCCATCAGAAGTTGATAGCTGGAAGCGCACTGGTTTTATATCCCAGCCATGGATGTGCTCGGAGCTATAAACCCGTCGTCCTAGTCGCTTGAGTGGCCTGCCTAGATGAAGACGGAAAAATAGGCTATATGTACCTTCTGGGAAGCAGAATTCAACCTCCCCTCTGACCTCAAACCACCAAATTTGTGAGAGATAAGCAACCGCATGAAACCTTGACTCATCATTTGGAATGAAATTCCAATATCTCCTATCATCAATGCCAGTTATTGAAAGTGCCCTTGAAGAGATTGTCATGCAGACACCTCCACCACCCTTGTCCAGCCAAAACTCCTTGGTGCCGCCGTCCAATCGGTTCCGGCGGCAGAGGCGCGCGTAGACCTCCTTCTTGGGGATCGCCTCCAGCGCGGCGGCTTCCCCGTCGGCGGCGACGGCGAGGAGGCGCGCGTAGTTGCGCGGCAGCTTGGCCTCCCAGACGCCGTCGCCGGACGCGGCGCCGCGGAACGTGCGGCTGAGCCGCGCCATCCGGCAGATCTCCGGCGGGTCCAGCCTGCGCAGCACCTCCGCCACGCAGCTCTCCGGCAGGTCCCCCAGCGCGGTCTCCCCTCCTCCGCCTCCCCCCGCCGACGACGAGGTGACACCGCCCATGAGCTCTCGAGCTCGAGCTCGAGCTCTCTCAGCAGTAGAGGGTGAGCGACTTGGACAGCAGCAGCAGCGAGGCCGGCGACTTGGAGAAGGACGGTGGAGGCAGGCTGCTACCACTCCTCAGCGGCAAGGAGCCCATCTCGTCGCCGGCCTCCCCTCCTCGGTCGCCGTGCCGTCGGGGCAGGTGAGACGCCGCGCCCTCGCCGCCGCCGCCGTCGTATGCTCTCACAAAGCACGGTCGATTGAACAGGCAAAGAATCTTGCAGCTCTTCGTCTACCTCTCTGCTCCTCCTCTGCTTCAAAATCAATCAATAGATCTCTGATGCGATTGCCAAGAACAAATCAAAGAACACAAAGAAAGTTGCGTGGCTTTGGGTCTCGAGTTTGCTCGGTGGCGAGGGTTAGTCGGTCAGGGCGTTTGCTTGCGGGGTTAGGTTGAAGGTTGGTTGGTTTCGAGGGGAGGGGGGAGAAGACGATGGGCAGCAGCAGAAAAGCCGGGAAGAAGGGTGCCGTGTGTGTGATCACCGATGGTGAAAAAAAGACTCAAAAAAAGGCTGGATTTTTCGCCCATGGGGAAAGGCCAAAGACTCGAGCTTTTTTCAAGGCG

Explanation	CPC Score
noncoding	-1.01739

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0447600.1	osa-miR394	Cleavage	4.5	13.021	1	20
Osa09LNT0447600.1	osa-miR172c	Translation	5.0	13.127	1	21
Osa09LNT0447600.1	osa-miR1880	Cleavage	5.0	16.61	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0447600.1	9	nan	Resistance or Tolerance	Drought tolerance	RZ12	RM201
Osa09LNT0447600.1	9	nan	Resistance or Tolerance	Other soil stress tolerance	R2638	C1263
Osa09LNT0447600.1	9	yldp9.1	Morphological trait	Seed	RM242	RM205
Osa09LNT0447600.1	9	gy9	Morphological trait	Seed	RM242	RM215
Osa09LNT0447600.1	9	qMXN-9	Morphological trait	Root	RM201	OSR29
Osa09LNT0447600.1	9	nan	Morphological trait	Root	RM160	RM3808
Osa09LNT0447600.1	9	Symptoms	Resistance or Tolerance	Other disease resistance	RZ228	RG667
Osa09LNT0447600.1	9	Ta1	Morphological trait	Culm/leaf	RZ228	RG667
Osa09LNT0447600.1	9	qCCAI-9	Physiological trait	Source activity	RM257	RM201
Osa09LNT0447600.1	9	nan	Resistance or Tolerance	Drought tolerance	RZ12	RG667
Osa09LNT0447600.1	9	mrl9a	Resistance or Tolerance	Drought tolerance	RM201	RM410
Osa09LNT0447600.1	9	Ta	Morphological trait	Culm/leaf	RZ228	RG667
Osa09LNT0447600.1	9	Ta	Morphological trait	Culm/leaf	RZ228	RG667

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus