\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0448100.2

AATCAACAGTTGCAGGGATCAGTAACTTAAAATGAGTTCAACAAGCACCTCAGTAACAAGTCAAGCTCAGCATTGAACCTTCTCCCTTACACAACAAAAACCGATTCACATGTTACTACAGCTTAGTCAAGCTCACTCGTGTCAAGTGTCAATCAGACAGAACAGAAATCAAACATTCCAACAGCAAAATCGGCCATTCGAGATGAAGACCAAAGTGGGGAATGAAAATCACGCACTCCTTTAGGACATTTGGATCTGTTTCTCTTCTCGCTATGCTTATCTCGGGTTCCTGAATCAGACAACTAGTTAGGTTGTCTGTTGTCGCCTTCTAAGCTTTTGCTAGGTGATGCGTCAAAACCATGATCGAACTGGATAACCTGCACTGTTTAAAATCGACCACCAGACATCATCATATGGTTGGTCCTTGAAGCACCTTCACAACTTCCTCCGCTCTAGCCTGTATCTCTTTTAGATATTCAACGAGTATGCGCTGCTGATAAGAACCTCCTTCTGTGCGAATTAAGACTCTCTCAATTCTCTTCTTTATAACAGCATAAAATTCTTCTGGTGAAACATTTCCTTTCCCCACTGTTAACCCATCAAGCAACAGCTTGTTCCACTCGTTTTCCGGAGCCTTTATTACAGATTCAAGAAAACTTTCAGGCACTATTACTTCTCCCCCTTTGTAAGCGTAACTACGCTTTTGGAGAAAATTGGACGCATACAGCTGCAACACCTTCTGCAGCATAGCTTGAAGTCCTGGTTTATCTCCATCTTGTTTAGCCTGCCTCAACTGAGCATTAACCTCTGACAGAAATCCTTCGTCTAGCTGTCCTTCTTTTTCTCTATTTGAAATTTCTTTCTCCATCAATTTGAGAGCCTCCGGATCTCTCGGTGGCCACGTGGCGTTTTCACCTTCGTGCATCACAGGACTAATAATTGCCTTCAGCACATCAGTTGACTGTTCAATCTTTTCATCAGTCTTATGGACAAGACGGTCAACTATGTTCATGACATTTTCAGCCAATTCTTCATAGTCTTTCATGCTTTATCATCATCCGATTTGCATAGATCAATTCTTGCTGCCAGCCGAACCCAGAAACCCTCATCGAACGCCAGAACATTTTCAACCACTATTTGATCAAGCTCTCTAGGATTTGCATCCCTCAGCATCTCGATCAACCTGTCAACTTCAATTGTCTTCTTCAAGGATTCTTCTGGGCCTTTATCAGTTGCATATAACAAAGTCTTCCGCCTCCGCGTGTCCGCGTGGAATGCTCTCCTCGCAGGGGAGAGCGCCGGGGCTCCCCAGCACCACCGCCGCGGCGAACCCGCGAGACGGAGCGCGGACTGGGAGGCCGGCCGGAGCGAGGTGGACGCCGCGGCCGCCGCCGCCGTCGACATCGCCGGCCGGTGGGCGGTGGCTGGAGGCTGGAGCGGAGAGCGCGCGTGAAATGTCCACAGATTTGGAGAGAGAGAGGATG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.944992
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0448100.2 9 20800071 A G
Osa09LNT0448100.2 9 20800390 C T
Osa09LNT0448100.2 9 20801813 A G
Osa09LNT0448100.2 9 20802460 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0448100.2 osa-miR5815 Cleavage 4.0 16.306 1 24
Osa09LNT0448100.2 osa-miR171b Translation 5.0 13.698 1 21
Osa09LNT0448100.2 osa-miR171c-3p Translation 5.0 13.698 1 21
Osa09LNT0448100.2 osa-miR171d-3p Translation 5.0 13.698 1 21
Osa09LNT0448100.2 osa-miR171e-3p Translation 5.0 13.698 1 21
Osa09LNT0448100.2 osa-miR171f-3p Translation 5.0 13.698 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0448100.2 9 nan Resistance or Tolerance Other soil stress tolerance R2638 C1263
Osa09LNT0448100.2 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0448100.2 9 gy9 Morphological trait Seed RM242 RM215
Osa09LNT0448100.2 9 qMXN-9 Morphological trait Root RM201 OSR29
Osa09LNT0448100.2 9 nan Morphological trait Root RM160 RM3808
Osa09LNT0448100.2 9 Symptoms Resistance or Tolerance Other disease resistance RZ228 RG667
Osa09LNT0448100.2 9 nan Resistance or Tolerance Drought tolerance RG570 RG667
Osa09LNT0448100.2 9 mrl9a Resistance or Tolerance Drought tolerance RM201 RM410
Osa09LNT0448100.2 9 Ta1 Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0448100.2 9 nan Resistance or Tolerance Drought tolerance RZ12 RG667
Osa09LNT0448100.2 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0448100.2 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0448100.2 9 qCCAI-9 Physiological trait Source activity RM257 RM201
Osa09LNT0448100.2 9 nan Resistance or Tolerance Drought tolerance RZ12 RM201
Osa09LNT0448100.2 9 pl9 Morphological trait Panicle/flower RG570 RG667
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus