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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0448800.1

CTCCACCCAACCGAGCCGGCCGCCTCCCCCGCCCCCAACGCCGCCTCTCCCCACTGGTGCCGCTCCCTCTCTCCTGTCTCACCGGCGGGGTGCGGTGGCGACGGCTTACCGCTCCCTCTCTCCCTCTCCCTCCTGTCTCACCGGCATGGCGCGACGACGGCGGGGTGCGGCGGAGACGGCTGAGATGGCCGTCCCTCCCCCTCTCCCTTTCCCCGTCGGCCTCGACGGCCGTCCCTCCCTCCCTCTCGACGACGGCAACCTCCCAACGGCAGCATCGTCGGCGTCCGTCCATACGGCAGCGTCGACGGCGTCTGCGGCGTCCGCGGGTAGAGCCGCCGCTGCCGGATCTGCCCACGGTCGCCGCCACCGCCGACGGATTCGGCAGCAGCGGCTCACTCCGGCGGCGGTGGTGATGTCGGCGGTTGCTGATTTTTTTTTTTTGCAATTTTTTTAATCGCTATTGTTAACCAAATTGGATTGTGTATGGATGAAAATTAGATGTGACGAACGGAAAAATACGAATATTTATATTAGATATAAATTTATGCACATCGTCACATGCGCGTATTCATGCACATATTTCACCCTGTCATTCTGTCATTAAAC

Coding Potentia
Explanation CPC Score
noncoding -1.0992
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0448800.1 osa-miR156l-5p Cleavage 5.0 19.295 1 21
Osa09LNT0448800.1 osa-miR416 Cleavage 4.5 20.051 1 21
Osa09LNT0448800.1 osa-miR419 Cleavage 4.5 24.077 1 21
Osa09LNT0448800.1 osa-miR2875 Cleavage 4.0 19.59 1 24
Osa09LNT0448800.1 osa-miR2919 Cleavage 3.5 17.492 1 19
Osa09LNT0448800.1 osa-miR2919 Cleavage 3.5 24.817 1 19
Osa09LNT0448800.1 osa-miR5340 Translation 3.5 21.227 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0448800.1 9 Spk(t) Morphological trait Culm/leaf nan nan
Osa09LNT0448800.1 9 Symptoms Resistance or Tolerance Other disease resistance RZ228 RG667
Osa09LNT0448800.1 9 Ta1 Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0448800.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0448800.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0448800.1 9 nan Resistance or Tolerance Drought tolerance RZ12 RG667
Osa09LNT0448800.1 9 pl9 Morphological trait Panicle/flower RG570 RG667
Osa09LNT0448800.1 9 qALSRL-9 Resistance or Tolerance Other soil stress tolerance RM201 RG667
Osa09LNT0448800.1 9 dhs9.1 Resistance or Tolerance Drought tolerance RG667 RM201
Osa09LNT0448800.1 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0448800.1 9 gy9 Morphological trait Seed RM242 RM215
Osa09LNT0448800.1 9 nan Morphological trait Root RM160 RM3808
Osa09LNT0448800.1 9 nan Resistance or Tolerance Drought tolerance RG570 RG667
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus