>Osa09LNT0448900.1

CACTTAAACTGTCATTTCATAGCTGGCCACAAAACAGTTGAACATCCTTCCTGATGACACTTGTTTCTGAAAACTTTATTCCTGATGCTATTGATTCTGCTGTTGAGCAATTGCAAATCAATGTTTAGAACCCAACCAATCTCTACTTGGTTTTCTTAGAAGACTCGTAGAGGTAACCTGCGATAACTACTACGGCTGCAGCAACTGCGACCCCAAACGCACTCTGCGCGAGTGTAGCAGCAGCCGTTGAACCATCTGATTTTGCAGAGCTACGTGGAGCGAACCCAAGTTCGGAGAGCTTCTTGTGTGATTCAGCGTAGTCCTTGAAGAAGGCATCCTCATCCTTCGCGTAATGATCCACAAAGCGCCTGAATTCAGGATCTTCCAGGAGAGCCCTGTCAGTTGGAAGTTTCAAAAGTCCCTCTGATTCCTCCCTCAGCAGTTCTAGGAAGTAAGAGTTGTCAAACTTAAGTGGTTCCTTGGTCCATGCACCGTCAAATCCAGATCTTTCAGGATGTGCCTTTCCCTGTGAGAAACAATCCTGGCAGTGTGATGATACAAATAATTACCAGGTGCTTATATTCAAATGGAGAACGAAATTATCACCAGGGTGTGGCCACCAGATAGAGCTACAATTAGGGGTGAAAACGGTACGGAAACGGACGGAAACCATCTTTATCGTTTTCGTTTTCATATTTTTTTTCGGAATCGGAATCGGAATCGGAAACCCCGGATACGAAAACGGAATCGAATATTATCAAAACCGAAAACGGAGCGAAAACGAACCGGCGCGAATACGGTAACAAAAATTTATTGGAATAAAAAACCCCTCAAACTGATAAATCCAATTGAATAAATTATCTATGTTTAAAATAATAATGTTGTTGATAAATCCCAATGTAAGACAAAAAATATTCTTATGTAATTTTAGATTTGCATAACAAATATTTTTTAAAAAAATAAAAGCCAAACACCATGGTATTCACTATTTAGTGCTTAAAAAAAGAATCTAGGGTATTTCAGTCACAAAATTTCTGGTAATTCCAAGAAAATTTCTGGAAAGTTTCCGACCGATTCTGAGTTCCGACGGAAACTGCCCTTATCATTTCCGATTCCGTTTCCGGGAAAATATTTCCGAATTTGTTTCCGTTTCCGAAAAATTCCGACCGACAAATTCCGTTTTCGAAAATAGGTCCGGTATCCGGAAAGTTTCCGTACCGTTTTCACCCCTAGCTACAATATCCTTGTCAGTCAATCCCATTTGATAAAAGATGTCTCTTAAATGTGGTGCACCTTTCTTCGCATCAGGAAGACGTCCTTCTCGCGGGCAAACTGATGAGTCCCTTCTTCCAGGAACAAAGTCAACGGTTGGACCTCCAGTAACTTCAACTGCAACCACTCCAGCAAGCTGATAAAGATCAGCATAAGTGATATTTGGATGCTTTCGCTTAATAGGCTCTGTCAGAAAATAAGACAACCAGATAAGTGGTAATCATGACACAATTTATTAAAGAACCATTGAAGTAAAATGACTTGGCAACCAATAATGTTCTGTACAGAAGAACGAATTACTCAATGAAGTCATCAGAATGGTGTTACAATTTTCCAAGGTCAAGTAGTAAACAGAAGCAAAAGCTTCCGGTGATAAAAGTGAAGAGGGAAGAGACCACCGTAATCAAGTTTCAAAGCTACTAGGCTACTACAAGAGAAGGAACAAGATCAGTAACACATCAATTAATCTTCTTAAAATGATCGGCAACAAGTGAGGATTGCCTACACAAGGACAAACAAGTAGAAAATTATGTAGCTACAAGGTCAATGATATTGCAAAGTACACACCAAGGAGATCAATGGCAATTTTTAGTCCAGCATTTGAACCATGAGTGTACTCTTCCTCATGCCTAATTGAACCATTTGCACCCCTAGTTTTTGTTTTTGCATCATATGTGCCAGCATCATGCCATCTGCAAGTACAGAAGATAAAGTCTCCACATGAAAAAGAGAATGGCAAAGTAACTAT

Explanation	CPC Score
noncoding	-1.17

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0448900.1	9	21199733	T	C
Osa09LNT0448900.1	9	21201124	T	C
Osa09LNT0448900.1	9	21202807	A	G
Osa09LNT0448900.1	9	21202940	G	A
Osa09LNT0448900.1	9	21203165	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa09LNT0448900.1	DTM_#DNAt_MULE_japo_Os0086	Chr9	-	21201851	21202335	484

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0448900.1	osa-miR5544	Cleavage	4.5	18.311	1	22
Osa09LNT0448900.1	osa-miR2095-5p	Cleavage	5.0	11.695	1	22
Osa09LNT0448900.1	osa-miR2106	Cleavage	4.5	16.483	1	21
Osa09LNT0448900.1	osa-miR5496	Cleavage	4.0	12.589	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0448900.1	9	gy9	Morphological trait	Seed	RM242	RM215
Osa09LNT0448900.1	9	nan	Morphological trait	Root	RM160	RM3808
Osa09LNT0448900.1	9	pl9	Morphological trait	Panicle/flower	RG570	RG667
Osa09LNT0448900.1	9	nan	Resistance or Tolerance	Drought tolerance	RG570	RG667
Osa09LNT0448900.1	9	Spk(t)	Morphological trait	Culm/leaf	nan	nan
Osa09LNT0448900.1	9	Symptoms	Resistance or Tolerance	Other disease resistance	RZ228	RG667
Osa09LNT0448900.1	9	Ta1	Morphological trait	Culm/leaf	RZ228	RG667
Osa09LNT0448900.1	9	Ta	Morphological trait	Culm/leaf	RZ228	RG667
Osa09LNT0448900.1	9	Ta	Morphological trait	Culm/leaf	RZ228	RG667
Osa09LNT0448900.1	9	nan	Resistance or Tolerance	Drought tolerance	RZ12	RG667
Osa09LNT0448900.1	9	qALSRL-9	Resistance or Tolerance	Other soil stress tolerance	RM201	RG667
Osa09LNT0448900.1	9	dhs9.1	Resistance or Tolerance	Drought tolerance	RG667	RM201
Osa09LNT0448900.1	9	yldp9.1	Morphological trait	Seed	RM242	RM205

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus