Transcript

Sequence

>Osa09LNT0449200.4

ATATATAGGCCAGTATCATCATTAATCTATTGAGTCAATACATCAAAATCCTGTATACATGTGCATCAATCCACCTGAAACAAACCCTCAGTGGAATGCATTATTATGAGGTTTATACATATGAACACGTAAAAAAAATCAACTGAAAAATGGCCTCTCTATGACGATTCTTGTGAGTGTGATCTATCCTCTCTACAACTCTACAACTCCTATAGCCCTACAGCAACTACAAAAACAAGGAAGAAAAAGAATGTGATCCTATGTGTAATCAAATCATCAATACAGGATAATGGAGCTCTGAAGCTATGGTGGCTGGAGCTGAGCTGATCAGAATTCAGAATTCAGAGAACGATGAGGAATAGGAGAACAATGGTGGCGGAAACGCTCTGCGGTTGCAGCGGTGAGCTTGCTGAAGGCATCACATTGACCTGGGTGCCGTTTGGCAAAGCTCCTTTGGCTGCTTCAGGGGTGTAGCTACTCGGACCAAGACCGGGTTTCGAAGGAACAGCTGAAGGGCTGGGGTTCACCGGAAGTCTGCTCGATTCGTCGAAGTTGTAGCAGTTGAAGTTTTTCCAGCCCAACACCATTCTCTCTCGGTCAAAGACGACCTTCAGTCCAGACATGAAATTCTCTCCTATTAAGTTAACACCCTCACTCTTCATAATAGCCAAGCAGTACCCAACTGGATTAAAAGCATTGTCCGTTATGGTAATTATTGGATCGTTAACAGGAAATATGCTTCCACCTTTTGCTGTCAGACTTACATTTGGATGAACAATTCCGTTGGCACTTACTGAGTAGCAAAATTCAAACGGCATGGAAGAGTCAAGCATGTTTCGGCTCGAACGGATTTGTGCATCAAAACTGCTAGTGATTTGAGTATACATTGGATCAGACAGAGCCGTGAAAGACGTGCCAGAGTCAACAATAGCACTGAACTCTGTGCTGATCGATTTACTTCCCACCGTAATTCCCGTGATAGTTATGTTGTAATATGGATTCTGTTTATAAACATTCAATGGAGTTTCCTTCTGATCCGAGCTTCCTGTGTCCCCAAAATTGATCCTACCATGACCGTCATCGCCAAAGCACATGGAGAAAGAATTAGCAGCAAGTCCTTTGCTTGCTAGCAAGCTAGGAACCGATTTGCTGTCCATCCCAAGCCCAAGCAGACCGTTTGGCGCAGCACTGCCTAGAAACGATCCTGTCTGAACCTGTCCACAGCCGAACATTATCGGAGCTGTAACGATTTTCGATTGCGCGGAGTCAGATGTCAAGTACAAGACATCCTCCACTAATACCCCAGAGGATGAGGTGTTATCCGACAAGTACTGGATACTGTAGGGGCAGCTGTTACTCTTAGAACGGCAGGCATTTTGGAGATCACACAAGTTGCTACTGCACGGGACCTTCCGGCTAGTAGTCGATTGCGCAGGGCTATACACGTCGAACTTCAAGCTTCCGTAGTTGGGGGATTGGAAAGGAGCACACTTGAGGCAGTCGCATGGCACCCAGAAGAGGTCGCTGCCGGTGTCGAGCGCCACCAAGAACGTCACGTTCGGCGTCCCCAGCGCCACCACCGCGTAATGCAAACTGCGCAACCAACCCGGGACACCCGCAACAACCACCACTTTGCCTTCTTCAATCCACCATAAACAAGAGAAAAAAACCAGATAATTCAAAGATTCAATCCGAGGCGAGCTTACAATCCGAAATCGTTGAGGCGGTCCCGTGTGGCGGCGCGGCGGCGGCCGCCCACCGGCGCACCGCCGCCGAGTACCGGTGGTGGACGTCCAGGCTCAGCGCCTCCGCCGCGGCCACGGCGGCGAGCAGCAGCAGCACAGCCCGAACAACCACCACACCACCACCACCACCAACCATAGCTCGCAACGAAGCAAAGCAAAGCAAACGCAGAGAGAAGAAAAAGCTAGTATCAACTTTATACGGAGAGAA

Coding Potentia

Explanation	CPC Score
noncoding	-1.08718

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0449200.4	9	21347480	A	C
Osa09LNT0449200.4	9	21347763	G	A
Osa09LNT0449200.4	9	21348485	G	A
Osa09LNT0449200.4	9	21348501	A	C
Osa09LNT0449200.4	9	21350083	A	G
Osa09LNT0449200.4	9	21350922	G	A

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0449200.4	osa-miR159a.1	Cleavage	4.5	10.596	1	21
Osa09LNT0449200.4	osa-miR159b	Cleavage	4.5	10.596	1	21
Osa09LNT0449200.4	osa-miR159c	Cleavage	5.0	10.596	1	21
Osa09LNT0449200.4	osa-miR159d	Cleavage	5.0	10.596	1	21
Osa09LNT0449200.4	osa-miR159e	Cleavage	5.0	10.596	1	21
Osa09LNT0449200.4	osa-miR159f	Cleavage	4.0	10.596	1	21
Osa09LNT0449200.4	osa-miR166i-3p	Translation	5.0	22.545	1	21
Osa09LNT0449200.4	osa-miR444a-3p.1	Cleavage	5.0	22.388	1	21
Osa09LNT0449200.4	osa-miR528-3p	Translation	4.5	24.323	1	21
Osa09LNT0449200.4	osa-miR444d.1	Cleavage	5.0	22.388	1	21
Osa09LNT0449200.4	osa-miR2867-3p	Cleavage	4.5	16.332	1	20
Osa09LNT0449200.4	osa-miR2868	Cleavage	5.0	18.598	1	20
Osa09LNT0449200.4	osa-miR5337a	Cleavage	4.5	18.515	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0449200.4	9	gy9	Morphological trait	Seed	RM242	RM215
Osa09LNT0449200.4	9	nan	Morphological trait	Root	RM160	RM3808
Osa09LNT0449200.4	9	Spk(t)	Morphological trait	Culm/leaf	nan	nan
Osa09LNT0449200.4	9	dhc9.1	Resistance or Tolerance	Drought tolerance	RM215	RG667
Osa09LNT0449200.4	9	nan	Morphological trait	Root	RG667	RZ404
Osa09LNT0449200.4	9	rwc9.1	Resistance or Tolerance	Drought tolerance	RM215	RG667
Osa09LNT0449200.4	9	yldp9.1	Morphological trait	Seed	RM242	RM205

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus