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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0449300.1

TCTTAATTAAGTAACCTGAATACACCAGACTGTAAGAAAAACCGGAGGGATCCATGTCCAGATTCACAGTAAAGTGTCACATCCCTTCAAAATCTTTTATATTATGGGACGGAGAGAGTAGATGGAAGGTAATCTTATGTCGTATAAGAACTGGATACTCTAGAGTCCCATCCATGTACTTAACAAAAATGGCTCCAAGGTAACACCGGAGAAATGTGATTCACACCATCATTACGCATGCCAGCTGCAAGAACAATGGTGAAGCACTACAGACATTGTCACTTCTGTTATTTTAGTTATCTCTGGTACTTCAAGTATTTTAGTTGGGGCTGGAGATGTGAAGTTCTACATGCCACCTCTTCTAGCGTCTGCCCTCATCAATAGAGGTGAACATCTCTAATCTATCGCCATGCTGCCCAGCGAGGGGATCCAGGATGCTGACCCATGTGCTGTAGTCAATAGGCGATCCACCACCAGGCTGAAGGAATCCGTTCACAAAGAAGAACGGTGCACCGGCTACTCCTCTCGTGCACCCATACTTGAAGGAAACCCTCGCTGCTAGGTCAGTCCTTATATCGCTGAAGCCTGACTGGAACTCAGACACCGAATTACCGACAACCCGTGCTGCCAGCTTTGACATCTCGCCACTTATAACAGTGCTCGATAGTGAGGATGTTGCAGCATTGTAGAACTTACCCTGGCTCTTGAAGAACAGCTCCAGCAAAGGATAGGTCGATGATGAGTTCAATTTGTTAGCTATGTAAAGTGCACGGCAGGCAAGGAATGAATTGGTGTGGTACGGGAGGGGGAAGGGGTGGACGATGAGGGAGACCCTGGGGGCGTAGCGGTCGACGGCGAGCCTGAGGGGCGCCCAGGCGTCGCGGCTGTCGGGGCAGAGCGGGTCGAGGAAGGCCTCGACGAGGATGGTGTCCTTCCAGGCGGCGGTGGCGGCGTCCCCGTAGGCGAACCCGTCGTAGCGCGGCGGCACGGAGGCCTGCGCGTGGAGGACGAGGAGGTAGTAGGAGCAGGAGGCCGCCACCGCGCACAGCAGCAGCATCCGCCGCAGCAGCGGCGCCCTCGGCCTCGCCATCGGGGGGCCAAATCTCCCTCTCCTCGAGCTCGAGGCTGCGCGCGGTGCAGCGTGTGCTACTCTGAACCTTCTCTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.976746
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0449300.1 9 21354824 C T
Osa09LNT0449300.1 9 21355281 C T
Osa09LNT0449300.1 9 21355830 A G
Osa09LNT0449300.1 9 21355993 C T
Osa09LNT0449300.1 9 21356272 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0449300.1 osa-miR2094-5p Translation 4.0 21.696 1 21
Osa09LNT0449300.1 osa-miR2094-3p Cleavage 5.0 16.16 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0449300.1 9 nan Morphological trait Root RM160 RM3808
Osa09LNT0449300.1 9 nan Morphological trait Root RG667 RZ404
Osa09LNT0449300.1 9 dhc9.1 Resistance or Tolerance Drought tolerance RM215 RG667
Osa09LNT0449300.1 9 Spk(t) Morphological trait Culm/leaf nan nan
Osa09LNT0449300.1 9 rwc9.1 Resistance or Tolerance Drought tolerance RM215 RG667
Osa09LNT0449300.1 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0449300.1 9 gy9 Morphological trait Seed RM242 RM215
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus