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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa09LNT0449600.1

AATAGTTCAATCAAACCATCAGAGCTTGCCTTTGATCGAGCAGAAGATCAGGGAACTCGAGAAGGTCAGGGACATGCTGAAGATTCAGAACCGAATGAAGTGTCGCCCATCAGACGTGTGGCCTATGATCGCCGTCGTCGTCAAGGCGGAGGTTGACGCCGTGTTCGCGCAGCGCGTTGAGGATGGCCCAGACCTTGGTGCGGTTCTTGAACCCCTTCTTCTCCACCTCCTTGGTGGCGTCAGCGTGTATGGGCTCACGTGCCAGGCCGTCCACCTTGAGGCGCATGGCGAGCACCTCCCCGACGGCAGCGGCGGCCTTGGCGTTGCAGGTGCGGCCGCACTCGAGCCCGTCCCGGAGGGGCTTCTCCACAGAGGACGCGGTCACCACGACGCGCCCGCTCTGGCGGTCCACCACGTTCGCCGTCACGTACTTGAGCGAGATGAACAGGCGCAGCACGTACCGCTTGGCGATCGACATCGATCGAACAAAACACAGCTGAAATGAAACAGCACAGGGCGCCTAAGCCCGAAGCGAACTCCTCAGTGGCATTCTCCCGAACAGCTAGCGCGCGGGGCCACGGACGGAGCGCAGACAGCCGCGAGCTGACAGGTTGAATGCGGGCGTACTGAGGCAGCAAAGACGAAGGGTTCCGCGAGAGCAGCAGGACGAGGAGTACGGCGGCGGCGACGGCGGCGGCGGCGGCGGCGCGCGTGCGGAGAGCTTTCTGGTCCTCGTCGTGTCGTTCACTCGCACTCT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.879294
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0449600.1 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0449600.1 9 gy9 Morphological trait Seed RM242 RM215
Osa09LNT0449600.1 9 dhc9.1 Resistance or Tolerance Drought tolerance RM215 RG667
Osa09LNT0449600.1 9 Spk(t) Morphological trait Culm/leaf nan nan
Osa09LNT0449600.1 9 rwc9.1 Resistance or Tolerance Drought tolerance RM215 RG667
Osa09LNT0449600.1 9 nan Morphological trait Root RG667 RZ404
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus