>Osa09LNT0449700.1

CATGGATGCATAGCATGACCTCATCTAATAGGCAACTTGCCACAATAGATGGGTCAATCATGTTTTTTGCCTTCCCTTCATTCCATAGGTTCCACGCATATATTGAAAGATTTGGGAAGTCCTCAATGAAATCAGTAGAGCTTATCCTAGAACCGCTTACGATCTCCAAAAGCAGCACACCAAAGCTATAGACATCGGACTTCATAGAAAAGATACCTCCCATAGCATATTCAGGAGCCATGTAGCCATATGTTCCGACGACTCTCCTAGTAATTCCATTTTGCTGGTTGTCCCCAAAGATCCTTGCCATGCCAAAATCTGATATCTTTGGGTTCATTTCTGCATCCAGCAAAATGTTGCTTGCCTTGAGATCTCTATGGATTACTGTTAATCTTGAATCTTGATGGAGGTAAAGCAGGCCCCGGGCAACCCCTTTTATAATCTTGAACCGTGTGGACCAGTTCAATGATGATTTTCTTTCACTATTGAAAAGAGAAGCATCTAAGCTCTTATTGGCCATAAACTCATAAATCAGCAACTTCTCATCTCCTTCGATGCTGCAACCGACAAGTCGAACAAGGTTTCTGTGCTGTAATTTGGCAATTAGGAGCACCTCATTTCTGAATTCCACTACTCCTTGTTCAGAACACCTGCTAAGTCTTTTGATAGCAACTTCACGACCACCTATCACTCCCTTATATACTTTGCCAAAACCTCCTTTTCCATTCATAGCTGCGTCAGAAAAATTTTCTGTTGCAGTGGCAATCTCGTTATATTCTACAAACGGAAAATCAAGATCTTGGGCAGGGATTTCTTTCCCAAATTCATCAGAGACACTCAATACTCTCAAGGCTCGCTTCTTGTTGTTCTTCCCATCATGTTTGACGATCATTTCTTTGAACTTGGGAACACATATGAGGATGCATGTGGGTATAAGAATACTTGCCAACACTATTGGAAGTGCAAATTTCACTGCACTTCTTTTTGACCCCCTACCTGCACCTGCCATTCGGAGGTACAGCGTCTCGCCTAAGTCACCCCAGCTCTCGTTCACCTTCTCCATGTCGAGCAGCTCGCCGCCCCACATCAAACACCTGGTCGGATCTCTCCTCGTGCTCCTGCTCAGGTCGGCGTAGGCGTACGCCACGCAGGAGCAGTTGCGGCGGCACGCCGCCGCGCACTCGCCGGCGTTCATGTTCCCGACGAGCGCGTACCCGTCGGGCAGCTTCATGTCCGGGAACTCCGCGAACCCGTCGCCGCAGCGCGCCGCCTCCTTCCGGCGACACCCCAGCGAGAAGTCGCCGCGGCTCCAGTCGGCGCCGCTCGCCGGCTCGAACCCTTCGAGGCAGTGGCACGTCGAGACGCCGCCGCCGGCGCCGCCGCCGCCGCCGGTGCTGTTGCCGCAGTAGCCGAACGCGCCGCAGTAGCCGAAGAGGCTGCAGTCGCGGCGAGGGAACCTGGCGTTGGTGACCCACGCCGACGACACGTTGCTCCAGCTCTGCAGGTGGAGGTCGCCGGAGTAGGACATGAGGTAGTGCATCGGCGGCGCTCCGGCGGAGAGGGTGAAGGAGGCGTAGATCTCGTCGTCGGTGTAGACGACGGCGGTGTAGATCGCCGACGAGCCGCCCTTCTGGTAGTTGCTGTCCACCATGTAACCCGTCCACATCGAGCTGCGCCAGTGCACGCGCGACCCATTCCAGATCTTCGCCTGCAGCGGCCTCTCCGGGTCGACGCCGAACGAGAAGCTCCCCGGCGACGGGTCGCCGGCGCCCTTCCAGGAGACGATCCGCATGCCGGAGTGCGACCGGTAGTCGATGCCGAGCTTCATGCCGGCCATGAACACGTCGCTGGGGTGCTCGAACGTCTGCCACAGGGCGGTGTCGTCGGGCAACCGTAGCACGAGGTTGCCGGAGTTCACGAGCACCGCCACGGCACCCGACGAGTTCACGCCGCCGGCGGTGACATTAGTCCTCCAAAGAACACGGCCGGCCGCGTCGGACAAGACCAGGTTGCTGCTGTCGTCGGCCATGGCGAGCTTGGAAGAAGAAGGGTGGTCGGTGATGGGGGCGAGCTGGTCGGCGACCCACACCACGGTGAGCTTGGGGACATTGTTGTACCATATGCCAAGGTACAGTCCAGATGAGTTGGACGGCGAGAAGAAGCCCATGGCGAAGGCGCCGCCATCGGAGACGAGGGTGGCGCCAGGGGAGAGCGTCTTGCCGACGGCAAGCCGGTCATCGGAAGCAGCCAACGGCAAAGAAAGCAAGAAGAGAAAGATGGCAGTGGCAGCTTGAGTGCAAGTGCAACCGCGACGGGGAGAGGCGGCGGGGGACGGCCGGTGGCACGAGACGCGATCACGGCGACCTCGGGTCGGGCAAGGGAAGAAGACGGCGCCCGGAGTCCCGCGTCACGCGCCCACGCACGCACCGGCTCCCCCGGTGCTCGGCGACGGACGGCGACGGCGAGAACAGCGGGAAGGCAACGATGGCACGGTGGAGGTGGAGAGTGAAGC

Explanation	CPC Score
noncoding (weak)	-0.0912268

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0449700.1	9	21774203	T	C
Osa09LNT0449700.1	9	21774493	T	G
Osa09LNT0449700.1	9	21771787	T	C
Osa09LNT0449700.1	9	21772644	T	C
Osa09LNT0449700.1	9	21776182	T	C
Osa09LNT0449700.1	9	21772915	C	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0449700.1	osa-miR5797	Cleavage	5.0	9.34	1	21
Osa09LNT0449700.1	osa-miR5802	Cleavage	4.5	23.612	1	24
Osa09LNT0449700.1	osa-miR167h-3p	Cleavage	4.0	23.407	1	21
Osa09LNT0449700.1	osa-miR2094-5p	Translation	3.5	14.818	1	21
Osa09LNT0449700.1	osa-miR3979-3p	Cleavage	4.0	14.443	1	20
Osa09LNT0449700.1	osa-miR5499	Cleavage	4.5	17.302	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0449700.1	9	dhc9.1	Resistance or Tolerance	Drought tolerance	RM215	RG667
Osa09LNT0449700.1	9	rwc9.1	Resistance or Tolerance	Drought tolerance	RM215	RG667
Osa09LNT0449700.1	9	nan	Morphological trait	Root	RG667	RZ404
Osa09LNT0449700.1	9	yldp9.1	Morphological trait	Seed	RM242	RM205
Osa09LNT0449700.1	9	gy9	Morphological trait	Seed	RM242	RM215
Osa09LNT0449700.1	9	Spk(t)	Morphological trait	Culm/leaf	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus