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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0449900.1

AAACCATCCACATCGCGCAGGATCACTCAATCCAAGCTGTGAAATTCCCAGCATATGCCACGTTACAACCTCTGGTCCTTCCACAAAAATTGAAAAAGAAAAAAAAAGCAACATCTCTAGAAGGCTAAAATAAACACTTCAAGAAACCGAACATTTACAATTCCAGCGCCTAGAATCTATTCCAGTGTGGCGAGATGCCATGCAAGGCTTGAACAGAGATTCGACACTCAGACAACAGTTCCAAATCCATGACCGATGCGATCGCTGTGTTGATTATGACTGCTGTATATCCCGAAATTAATCTCATCATGCAACATGATTAGTCACCAGACTTCTCAAGTTCACACAGCCAAGTGGTTGTCAATATCAAAACTGCGAAGATCTGAAGCACCAGTTCCTATCCTTTTGTTTATAGTGCAGTAGTGGAATTTGATATTTCCGGACTTGACATCTTCAAGATACATCCTCAAGGTGACAATGATCGAAGAAAATGCTAGAGAATCAAATGGTATGTCATCCAAGGCAAAAAGTGCACATTCTAGCGATTCAGGTCCAGGTGAGAAGTTGGGGGTCTTCAATCTTGCTCGGAAAATAATGTAACTTTGGCCAATCAGTGGAATATCCAACTGAGCAAAAGGTGAAAGTATCTCTACATCTGCACAAGCTTCCTCCAATGTTTCCCGGGAGGCTCCTTCCGCTGCAGACTCTCCAACCTCCAAATAACCAGCAGGAAGAGTCCAAAGGCCATAAGCTGGTTCGATCTTTCTTCTGCAAAGGAGTACTTTGTTATCATGTTCCACAAGACAGCCAACAACCATTTTGGGGTTCTCATAGTGAACTCTTCCACAAGAAGAGCAGACAGCCCTCATCTTTTCATCTCCATCTGGAATAGCCAGTTTCGTCGGGCTTCCACAAGATGGGCAAAAGCGTATCTTTGACTTGGGCACCACGGGGGGAGGCGGCGAGGGGGCGGGGGAGCTGGCGTTGGAGGAGGAGGCCGACGACATGCGTGGCGGGCGGAGCCTACTGGCCGCGGAGGCGGCGCGGGGGAGCGGCGGCGGGTGGCGGAGGAGGAGGCGGTGGAGGCGCGGGGAGAGGCGGGCGGCGTGGTGGTGGCGGTGGAGGAGGAGGTGGTGGGATCTGACGAGGAGCATGGCGATGGTGGATTTTAGTAGTAGGCGAGAGGAGGGGAGGGTTGGTGGGCGGAGCGGAGGAGAGGAGGAGAGATGGAAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.711571
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0449900.1 9 21923107 A C
Osa09LNT0449900.1 9 21923791 A T
Osa09LNT0449900.1 9 21924293 A G
Osa09LNT0449900.1 9 21925229 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0449900.1 osa-miR5828 Cleavage 4.5 15.038 1 21
Osa09LNT0449900.1 osa-miR1853-3p Cleavage 3.5 7.686 1 22
Osa09LNT0449900.1 osa-miR408-3p Cleavage 5.0 17.308 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0449900.1 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0449900.1 9 gy9 Morphological trait Seed RM242 RM215
Osa09LNT0449900.1 9 dhc9.1 Resistance or Tolerance Drought tolerance RM215 RG667
Osa09LNT0449900.1 9 Spk(t) Morphological trait Culm/leaf nan nan
Osa09LNT0449900.1 9 rwc9.1 Resistance or Tolerance Drought tolerance RM215 RG667
Osa09LNT0449900.1 9 nan Morphological trait Root RG667 RZ404
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus