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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa09LNT0450800.1

AGACTACAGTAAATACATATTGATATGTTCTTATGAAAAAAGAGCAAGATTGGAGTATATTACATAGTGACATGTGCACCTTTTACAGCCCACGGAGTCAATTAATATGGATAAGAGTACTATATAAACTCAAAAACACTTAGGAAACCATAGTCAAATACGTTTTTAACGTACAGAAAGTTCATCAAGAATGGAACTGCTTATTAGCCTCCTTTTTAAACGTTCATACTTGTCTGTTTTTAGCAGCAGTCTAAGTAATTTACTGATCCCTGCAAAAAAATGTAATTTACTGATCAAGTATCAAGCTTCATAAGAATAGTCTAGCTCCCCCAGCTAACAATGTGATGACGAATCGAGCAACGATGTAAAAGGTTGCGCAAAGCCAACCTATATAGGACGTGGCACTGCAAAATGATATGAAAATAGATAAACAAATATATGATAATTCTAATATTTATGAGGCAAGGAAAACATTAATATTGTATTATATGGTTTAAAAAATGTTGTATTCAAATTACTTTTTAGCAAAAGGAAGTGAAATTCAGTGACTGAATCCACTGAAACATCCATTTTACCTCATACTGCAATATTGCAAACTTCATCGGCTGAACTGACGAATTTATCGTAGTAGAGCTTATATCTTTTCGATGAAATAAAAAAATTATGCAATATTTGATGCATGAAATCCGTAAGGTAAAAGGCTTAATCCATGGTTTTTTTTTCACAAGGTATTCATCAAGAACAGTAACCATACTAAGTGAATGATGGTAACAAAATTCTGAGAACATAGAAATTGGTCAAAAGAAGTTCTGAACATGCCAAAAATCAAATATGTAACTCCGCACTGTAGCAGTAGCACTCTTTCTTGTGCTTGATCAAATCACTTGATGCCATTATATCATTACGATGAAAAGGAGTTATATTGATCTGAAAGAAATGTGAAATAGATCAAATCCCTTGAATGTTCTGAAATCACCATCATAATTTTCATTAGTGACAAACAGATGAAATGGGAAGGTAGAGAGGTAGGGGATCACAAACTTGTAAGGATATATTATTTAGCATCAAAGGGGAGGCCAATTTTCCTCGAGTGGCCATCCAGGTAGAATGTACCTTTGACCACCTCTGCTTACCGAAGATACTGAATCTTCCAAACAAACCTTTGGTTATTTGTTTATAGGAGGGGGAGGGGGGAGAACAAAGATTAACCTGAGCTAACAATCTCTTACAAAGAAGATATCATAGGATGGTTGTATTATAATATCTGGAAAGTCGGTGACCATGAACGAATATGTGGTACCAAATATATTGGGATATTTTCTTGATAGAGAACTCATATGGAGAAACCAGATAAGCCGCTGCTTTGGATGGGAATGTTATGGGGACTGACCTCAGTGATAGCCCATAGCTGCTGCTACAATGATAGTAGACAATAGGAATAGGAATGAACTTAATGTCTTAACATGTATCCATAGGCTGCATCTTTGGACAGCTATATATATTCAAAAGTCGTTTGCAGAAGATCACCATAAAAATGGAAACTCAAAAGTGAATCATGATGCCTGGTGGCTGATGCTACTTGTCTACCTTACACTCGTTTCTGCAGCAACAGGAGCAGACAGCCTGATAGAAACTCCTCAATTTTGATCGATACATGCAGGGACTGAAGATAGGAAGCAAGAACACAAATCGCCTGTGGCATCCATCACTCGACTCAATAGATATACGGAGGGAGGAGAAGCGGCCAGAGAATCGCCGGGGAGAGAATCCCCTAGAAGAACACACAACCTCGCAGAAGTGAAAGCTCGGATGAAACAAAGATTGGGGGGGGGGGGGGGAGGAGAAGCGCTAGAGGGGGGTGGATTGGAGAAGAAGCGCCGGGGGGAGAGGGTTGGAGGAGAAGCGGCGCGGGGATGCGAGAGCGGCCGGTGGCGGGCCCGCGCCTGACGCGTGCGCGCGATTGGGGAAAGGAGCGAGAGCAGTCGGCGCCGGGCCCGCGCCTGGCACGCGCGCGATGTGGGGAAGGGAGGAGTTGCGCGCGGGGGCTGGTGGGGAAAGGAGAGGAGCGCGCGCGGGGAGAGTAGCGCGCCCGGCGGCGGCGGCGGAGAATC

Coding Potentia
Explanation CPC Score
noncoding -1.31927
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0450800.1 9 22459448 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0450800.1 osa-miR5799 Cleavage 3.5 23.456 1 24
Osa09LNT0450800.1 osa-miR810b.2 Translation 5.0 11.098 1 21
Osa09LNT0450800.1 osa-miR810b.2 Translation 4.5 15.2 1 21
Osa09LNT0450800.1 osa-miR1848 Translation 4.0 19.351 1 21
Osa09LNT0450800.1 osa-miR5075 Cleavage 2.0 21.261 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0450800.1 9 nan Morphological trait Root RG667 RZ404
Osa09LNT0450800.1 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0450800.1 9 qTN-9-2 Morphological trait Culm/leaf RM215 RZ404
Osa09LNT0450800.1 9 nan Morphological trait Root RM215 RM205
Osa09LNT0450800.1 9 Spk(t) Morphological trait Culm/leaf nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus