>Osa09LNT0450900.2

GGCCAGCAGTTTGACAAGTTTTAGGAACTGTTACCTCGAAAGAAAAAAAAATTCAGACAAGTGCTCAAAATTAAGGTTCCTCACAGTTACCAGACAACTCTCACCATGACTGATTACGGAATTGAATTTTACCAGCCCATCATAAACATACAGTAAAAGCTAATGGCGTCGAATTTCACCAGTGCATCATAACCAATACAGTAAGCTCGCTAATGGTGAGTTATCTTATCTCCTCTCCCTCCTTTGCCTTAAGAGGAGGTGCTCTTATCTGATGCTGTTCCCATCCTCTGTTGTATCTCAAATAAAGCTTGGCCCACAAAATCGCATTCATCTTTTTTTGAATCCACGCCACAAAAAACTCTCCTCGTGAACAGGCGTGACTCCAAAAACATATGGTGTATGAGTTGCCACCACCTCGTGGAAGCAAACACATGTAGATCTCTATCCATGTTGTTCATCTCGTGTAAGATCAGGGAGATTAATGTTTCGTTGTTGATAGCATCTAATTGTTGAATCAGTATAATGCAGGGTCTTCTCGCTGTAGCTCTCAGGAACAGGTCAGACACCGCCTTTGACCCAGTATTTTTAAAATCCTTCAGCACTTGCATTGCATCAATGACTATGGAATCGAATGACTGTGTTGCTGCAAAGAGTTTGGTGACATCACTCTTACTGAGCGAGGTGTTCCCATACAGAATGGCATTTGTCACAACCCAGCGTGAATTTGGATCAATCGACTTGTTTGTTTCCAATAACTTTAGAAGAGACATTCCAACACCATCCCAATCCCCCTCTTTCTCATCATTTCCACAATAAAATCGTGTCCTGATTCTTGAGAGAATAGTCGGGCATATCAGGTTTATCCACCTCACAGATACTACCAGAATAGTAATACGATGCCCGAAAATCACCCAAGGATCATCAAGCAGCAATTTAAGCTGGGTGGTTGTTATGTCAGTCATAACTGTTGAACCACATCTGTTGTGAGGGACCAACTCATCAAACCGGTCAAGGAAGATCAGAAGTGGACCATCACGTGATTCAGGTCTCTGTATGCAGGTGTTGATCTGTGAGACAGAGTCAGAAGGGAAGTCCTTGATGAGTGACGAAGCATCCACGCTCGCAACAGGAAGACCAAGGGTCCTTCCTATCCCTTCAACCACAGCTTTTTTATCACATGGACCATGTAAGAGAAATGTCATTTTGCCCTTTGTGGCCTCATGTGGGAGGTGAGTATAGTAACTCATGAAATTACCAATCATCTTACTGGCTCTGCCAACCACATTAGAAAGAGCGGGGTCATCCACCATTTTCATTTGCAGAGGAGTTGCAATGACTGGATGTAAGATTGGTGGGTACAGGGTCTCTCCAACAGTTTTCTCATCACTACCTTTCCAAATCATGATCTTGGTCCCTGAGGTAATTTGTCCTGTAGTCATAGGCAGAGTTCCTAGAACCTTGAAGATCCCTATCTTTTCTTTGTTCACTAACAAAGGGAATGACATCCCTGGATACATCACACCGATCTACAACAAAATGCAAAATATATGAGAGTGGTAGTGGACTACAGAAAACTGCAGATGCTATCATGGTTGCTGCTTGGTGTTTTCATTGAAACTATCAACATCTAAACAGAAGAGCCATAGTTTACCAAGATTTTCAGTTTTCTATAGCCAACAGAACTAGGATCGATCAATAACTGATGCACAACCATCCATTCCTCCACCCTGACCGTGTTCTTCACCGTTACATGTGTTATTACTTTGTTGCCTATTTCACAGCTACATGACCCCTTATCATCCTCTTATTTTTGGTTAGTGTCATGTGTCTCTGTCTTTGCCACTACATGAGTTGTCAACCTCTTGTCTTTTTCACCGCTCCATAATCCCATTATCCTTTTATTTTTCGTTGGCACGCCCGCTTTATAGCACACACACACATACATTTGACATGTTTTTTAAGTAATTAGTTTGATTTTATACAAAATTTATTCACCAATCATACATTTGAAAGGATATATATACTCTCTCTTAATATACTTTAATTCCAAAACTTCGTGTTAACCATACACAATACAATACAATACATACAATAATTGGCAACCAAATACAACATGCATCATTAAATAGTTGCTAGAGATCTTCAGGTTCTTGAGTTATTTCTATTATGTACTCACAGTAATAATTTGATGCTTGGATCATCTCAACAGTTTATCCTCTCATCTGCTGATCATGGAAAAACAAAAGAAGATCGATTTTTGGAACATTCGACATATTCGATACAATATCTAAATCACTTGGGTGATATTCTGGTTTCATATATAAAGTGGTATGCCGAGCTTCTGATTGCTTTTCAGCTGCCAGCATATCATATAAAAGGCATTCTGGTGCATTTGTGCCTTAACCATTTTAACAACAAATGAGCAAAGGAATTCATAATCGGCTTTCCTTTCTCCATGGTGCCATTACTCTTGAGCAGGACAATAACAAAACGGTGGTTTTCACTTATTCTTACTCAATTCCAACCCTACAATAACAAAACGCTTGAATATTCATATAGATTAAAAAGTTCTTTTAGATATAGATCATAAAGTTAAAAAAAAATAACAAAGAAATATTTTTCTTGCACTGTTCATTAGTCACGTGCATATTAATTTGTACCAGCTATTGGTAGACTTGATGTTTTAGATATCTCTACATGTCAAACATCTTTGCTGAAGTAGGATATGTATAGCTGAGCTCAAACAAGCAAAGGAGGAAAGCATGAAAAAGAAATCAAATCTTTGTTGAAGTTTGGGCCCTTCTATGCTAAGAAGTCAGAACTTATTGATATTAAAACTGGAAGCAACAGATAGTACTACTTTTAGTACATATAAGTAACTCTGTGGGAATTCTTATTAGAAAGAACTGTTGAAATCATTTTTCTTTGAAATGCTATACCACTTCATTTACTCACTTTCTTTTTATAGTTTTCAAGTACACAAAAGACATGCACACACAGCACTAGGTACGCACACTATCATCTAACAACATTCAGGTGACTCCTCAGATCTTATACAGGTATTCCAAGAACTGCTGTAAGAAACCTAACAAAATTTGTTTCAGTTTATAAGATAATGATATACGTTGAATCTTAATAAATTTGTCCGATGTTAATTCACTTTGTTGTTGCGGTGTTTTTTTTTGTCCAGATAATGACGTAGCTCCAACTTCCATGGAAGCAAACATCATGTGTTACATCTTCCATAACTGAGTAATTTTTTTACCAAATTCTAAATTTAAGATTGGTTACACATTATAAACTAAAATCTGTGGTTACCATCTTTTACTGGTCCAGAAAACTTACTATGCAAAGCCTATTTTTTTACCCTCTTGACTGAATCCAGTCAATCCACAAACAGAATATGTTCTCTGAATGGATGCAATCAGCTACATCCTTAACAATCATGGTGTGCACATCCCACTCTTATGCTGTAGAGTTTATTTTTCCAACATTCAACCAAATATATATAGTGAAAATAATGGTATCACGAAGTAAGAAAATTACTACTCTCAAATAATAATAGGTAAAGTACAGATTTGTTTCCCCAAAATCCAATCCTGTGATGTAGTAATAAAGAACATAATTTACTTCCAGACTTGAAGATATAGAAACTTAAAGGAAGTATAGCTTAGCAGTAGCAATCACCATCTATTGAGACTTGAAGATAATAATAATAGTTTAATCACAGAGAAAAGTTCATCCAGATCTGCATTGATTGTACTAAGTAGATACCAGCGGAGAACCAACCACCATCGTACTGCTGCAAGGGCGCAACTCTCTTCCAGATTGGCCATGAACTCGGTGGCGTCCTTCTTCTATCACCACCTTGACCTACCTCGGTGGAGATTGGGAGCGACGGGATGGCAAGAAGATGCGTGATGAGGATGGAGGCGCAGCGGTGGAGATAGAAGGTAGGAGTCTGCTCTTCTTCTCTGTGGGCGGAGCCTCCTCCTCTTCCTTGTCTGCCCCCTCTCCTCTAACCATGGCGCCGGGGTGCTCGTCGACGGCGTCTTCGTGTTCGGTGGCTCCCCAACGGCGCCGCTCATCCGTCAATGCTAGCTGATGCCTCGGTGAAGGGGACGGAGGAAGATTGGAGGAGGATGCAGGATGCAGCAGCATGCAGTACTGGAGATGGAGAGGAATCAAAGGATGAGGTGGTAGTGGTAGGCCTGATGGCTGCTGCTGGGT

Explanation	CPC Score
noncoding	-1.04887

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0450900.2	9	22407554	A	G
Osa09LNT0450900.2	9	22407575	A	G
Osa09LNT0450900.2	9	22407892	A	G
Osa09LNT0450900.2	9	22410402	C	T
Osa09LNT0450900.2	9	22411503	T	C
Osa09LNT0450900.2	9	22412017	A	G
Osa09LNT0450900.2	9	22412520	T	C
Osa09LNT0450900.2	9	22412832	T	C
Osa09LNT0450900.2	9	22413309	G	T
Osa09LNT0450900.2	9	22413720	C	T
Osa09LNT0450900.2	9	22413739	T	C
Osa09LNT0450900.2	9	22414014	T	C
Osa09LNT0450900.2	9	22414295	T	G
Osa09LNT0450900.2	9	22414296	A	C
Osa09LNT0450900.2	9	22406863	A	G
Osa09LNT0450900.2	9	22407827	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0450900.2	osa-miR5540	Cleavage	4.5	16.439	1	21
Osa09LNT0450900.2	osa-miR5829	Cleavage	4.5	11.502	1	24
Osa09LNT0450900.2	osa-miR393b-3p	Translation	4.5	20.223	1	21
Osa09LNT0450900.2	osa-miR528-3p	Cleavage	5.0	21.272	1	21
Osa09LNT0450900.2	osa-miR1432-5p	Translation	4.5	16.563	1	21
Osa09LNT0450900.2	osa-miR2097-5p	Translation	5.0	22.735	1	22
Osa09LNT0450900.2	osa-miR2873a	Translation	4.5	9.08	1	24
Osa09LNT0450900.2	osa-miR2878-5p	Cleavage	4.5	13.239	1	24
Osa09LNT0450900.2	osa-miR5144-5p	Cleavage	3.5	16.691	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0450900.2	9	nan	Morphological trait	Root	RM215	RM205
Osa09LNT0450900.2	9	Spk(t)	Morphological trait	Culm/leaf	nan	nan
Osa09LNT0450900.2	9	nan	Morphological trait	Root	RG667	RZ404
Osa09LNT0450900.2	9	yldp9.1	Morphological trait	Seed	RM242	RM205
Osa09LNT0450900.2	9	qTN-9-2	Morphological trait	Culm/leaf	RM215	RZ404

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus