\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0451000.1

CATCAGACTAGGCTTGCATTGCCTACACAACCACTTTGTAAAATAAAAAGGTTTACAGTGGCCTGCCCTTCCCCTAAGAGGTTAATAGTATCTCCCGGCTCTGAAACTAATCCAAGGGCTAGCTTTGCGGTACTGTACATTCATCTGTCATTTCCCCTGTCCTGAAAATTATTAGGTAGAAATAACAGGCCTTGGAGGAGGGGGAGGAAGAGGCATCCTTGAAGGCGCATCTGCAGCCAGATCACTGATCCTCTTGCTGATTATGGCTGCGTACTGGCTCGGTATCTTCTTCAGCGCTTCTAAAGCAAATTGTTCCTCCTTCTCGGTTTCAGGCATTTCTCTTGACATTATTATTTTGGTGAAATCAACAAACTGGAAATTGTCAAACAGCTGTCGATCCTCCTGACAGTGCATCAGCTGCTCATCCCATGGACCATCGCCCACTCCGACAAGCACGATAGAAAGAGGGAAATGAGTGCATAGCATAAGTACACATTTTCCTTACTCAAATTCAAGTATAGCTATATATTTTAAAAGAATAGTAAGTTGCACCTTATGTTTTTTTTTTCGCCGGGCTGGCGGAAGCCAGCCGAAGTTTATTAATATAGGGAAAAAAGTTGCACCTTATGTTCAGTCAGTACTTTTAGATAGAATTCAGAAACATCTAATCTAATTAGTGTTGCCACTATGTACCTCGCCTGAACAAGAGCCTGTAGAGTCCTTTCTTCCAGGTAGTTCTCATCCCGATTGTTCGCAGAGTTAGCACCACAACATCTTGGAACCTGCCCATCAGCTATTATCAGTAGGATGTGATACTGGTAGCCGGAGTCCTGAGTTATTCTCATTGCAGTTTCTATTATTGGAGCTAAAGATGTCGGACCTGACAGCCGGACACGTGGCGCAATTTCTCTGTATCCCCTTAGAACTTCAGAAACACCATTGCAATACTGTCGCCTGCCCGAGTAGAAGCTGAAGACATTTTGGTCGTGCGTCGATGTGTCCCCAAATCCAAAACATGGGATCCTGTTGTCTTCGTCGAACGTCGATAAGGTCTTGCCGATGATACTAATCGCTTGCTCGTACGGGTTGAGGGAGTCCTCTGAAATGTGATGCAGGCTTCTCCCGTTGAAACAATGTTTCCCTGTCCACTCATTGCTTTTGGTGAAATCCACTCCAATGATAATATTGGACGACTCGAGACCGACCTTTTCAAGAGCTTCCTTAACCTGATCCAAGGTATCATATCTCTGCGAATCCCAGGAGTTGTTGATCCTCAGGTTGCCGATCTCATCTCTATTCAGGCGTACAGTCCAAGAATAAATGGTCCAGAACAGCAGCAAGAAAGTAGAAAAGAACATGCCGATTCTCGAAGAAAGAAGAAGACTGTGAAGAAAGAGCTCAGCACGAAGATGAAGGCGTTTCACAGTAGCATGGTGAGCGCTGAAACGAGTAGATGGTGGTTGCCGTGAAAATACTAGGCTCAGGCTGTTTTACAATGCTTGATTGCTTGATGCATTTTTCATTCTTTCAGTCTTCAGACAAAGTGCAGCTGTTTTGCTAGCACTGACTAATTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.693221
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0451000.1 9 22509615 A G
Osa09LNT0451000.1 9 22510010 A C
Osa09LNT0451000.1 9 22510100 A G
Osa09LNT0451000.1 9 22510201 A G
Osa09LNT0451000.1 9 22510259 C T
Osa09LNT0451000.1 9 22508153 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0451000.1 osa-miR6250 Cleavage 3.5 15.789 1 22
Osa09LNT0451000.1 osa-miR1869 Translation 4.0 16.438 1 24
Osa09LNT0451000.1 osa-miR2105 Translation 3.5 19.64 1 20
Osa09LNT0451000.1 osa-miR2867-3p Translation 5.0 15.409 1 20
Osa09LNT0451000.1 osa-miR3982-5p Translation 5.0 17.159 1 21
Osa09LNT0451000.1 osa-miR5158 Cleavage 4.5 16.353 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0451000.1 9 nan Morphological trait Root RM215 RM205
Osa09LNT0451000.1 9 Spk(t) Morphological trait Culm/leaf nan nan
Osa09LNT0451000.1 9 nan Morphological trait Root RG667 RZ404
Osa09LNT0451000.1 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0451000.1 9 qTN-9-2 Morphological trait Culm/leaf RM215 RZ404
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus