>Osa09LNT0451100.1

GGGATCATAGTCTTGATACGGGATCACACTATATCAATAAAATATGATAATTACCACTATTACTCATATCCCAGCTTATTATAATAACATATTATCTGAAAATTCAGCTTCCATGCTACCTCCTTCCGCATCCGGTTGTTTTTGCACACCGTGCCTCGTTGGCAGTGGCAGCACCACATTTGTCAAATAGGGAGTTTCGGACTTCCTTTTGCTTGAGGATCCCAGCAACATCCCAGGCTGTTTCTGTTTTCTCTTTTTACCTGGAGCAGGTTGTGGATAGTTGGAGATGGTGGTTTGTATGAAGGTGGAACCTATGCCAAGAGTACGCGGAGCACCCTCAAAAACAGCTGGTTCATGTATGAGCCTTTTCCTCATGTCAACAGGAATGACCCATGCCTTGTAATCACGGTGGTCGACCTTGGCCATGAAGTAAACAACATCGCCATTGTTGTCCAAACTGAGCAAGGGATGACCTATGTGGAGTCTCTCCAAGGTTGGGGTTGGGTGACAGTAGTTGGGTAGCTCAGGAGGCATCAGATGAGAGATGTCAGAAGCGTTGAGCTTGCAGTCCATGTGCCAGCAGCAATCGTCGGATTCAGTATTACTGCAGCTCCATTTGGCAACCGTCCAGCCCTGAGAGATGTAACCGGTTCTATCCGACTCGTGTTGAATAGCATCGACCTCCAGCTCAACAAAGTTGATGTGACCTTTTGCGTCGACGGCAATGTCACGAACATCTGTTGGGTCGACTCTGCCGGAAATGACTTTACCCTGCTTGAGCGGTGGTGGCAATGGGATGTAGCGAGGTGCGGCAGGCTGTACCTTGTCAAGCACATTGATGAGCAAGAGGCCCTGTTGACAGAAAACGCGGTGACGATATAGTGTTGTTTGCTGCTGCTGCTGAGGGGGTTGTGCGGTCTGAGGGCGTACGGGTGGTGGTGGGTGTCCTCAGGGATGTAGTGCAGGATGGCGACCTCGTGGTTAGTGAAGGTGATCATAGGGCCGGGATGGGTGATGCGCGTGAGAGACGGCGGGATATCATCAGCAATGGAGGCCTGGTAAACGAAGTAGTCGGCGAGGGATACAGTAAACCTGTTACCTCTGCCGAGGATGAGGCGGATGAGGAGGAGGTCATCGTGTGCGGCGATGATCTGGGGCTCCATGGCGTAGTCATCGGATGCAGGATTGAGGGTGGGAGAGTGGACGCACACGTAGGAGACGAGCTGCGGCTGGGCGGCGGTGCACAGGGTCACCTGGATTTCATGGCCCTCCCTTGTTTTGGAAGTAGCAGTGGTGGCGTTGCGGACGTCGGCGCCGGCGAAGTAGGCGAGCTTGTCGAGGAGTACCCATCTTGGCCTGCGCCGCGTCCCCTTGTCGACGGACCGGCCGTGGAAAGGAGGACACAGGGAAGCGTCCATGACGCCCATTTGCGCCATGATCTGATCCTCTCCTGGTTTTCAACGCAGCAGCCGACTGGATCTATATATACTATAATAAATAGAAGAACAGACCTTCAATCGCAATCGGAATCGACTCCGACGGCGTATCGGTATCGGAGGCCGCCCGCCGAGGCCGAGGAGGAAGGGGAAAGAAGAGCAAT

Explanation	CPC Score
noncoding (weak)	-0.544689

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0451100.1	osa-miR5833	Translation	3.0	24.337	1	21
Osa09LNT0451100.1	osa-miR2095-3p	Cleavage	4.5	14.323	1	20
Osa09LNT0451100.1	osa-miR2100-3p	Cleavage	5.0	22.776	1	22
Osa09LNT0451100.1	osa-miR3979-3p	Cleavage	4.0	19.123	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0451100.1	9	nan	Morphological trait	Root	RG667	RZ404
Osa09LNT0451100.1	9	yldp9.1	Morphological trait	Seed	RM242	RM205
Osa09LNT0451100.1	9	qTN-9-2	Morphological trait	Culm/leaf	RM215	RZ404
Osa09LNT0451100.1	9	nan	Morphological trait	Root	RM215	RM205
Osa09LNT0451100.1	9	Spk(t)	Morphological trait	Culm/leaf	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus