>Osa09LNT0451200.1

GCCAAAAATCTCAAAACATTCAACATTACTGGGGCAAATGAACACCCACATATGTATCACTGAATAAACTTAACAGAACGGCAACATCAGGTCTATAAGACTAGAAAATGGATAAGACAACATCATGTGTTCGTTGCCCTGGTGTAAATCTGTTGGCTGCAATGAACCGACACCATCCTGATAAGCCCCCTATCCATCAGATCCTTCATAGCCCTCCTAGCCAGGGACCCATTAATCCTGAGGCGCTCGGAGAGGACGGAGGGGGTGATCTGCTTGTACTTGGGCACCTCGGAGAGCAGCTTGTCGTAGGTGGCCTGGTCGAACAGCACCGAGTTGTTCACCTTCTCCTTTTGCTTTCCCTTGCTCCACTTCTTCTTCTGCTTGCCACCGCCGGACTTGGCGGGCTTGGACGACGGCGGCGGGGCCTTGTCCTTCTTCGGGGCCATTTCGACGACGCGATGCGGCGGCGGAAGAAGGCGCAGGCGAAGGCAAGGATGGCGGCGACGA

Explanation	CPC Score
noncoding	-1.04626

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0451200.1	9	22702634	C	T
Osa09LNT0451200.1	9	22702859	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0451200.1	osa-miR535-3p	Translation	4.5	23.857	1	21
Osa09LNT0451200.1	osa-miR1858a	Translation	5.0	13.558	1	21
Osa09LNT0451200.1	osa-miR1858b	Translation	5.0	13.558	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0451200.1	9	qTN-9-2	Morphological trait	Culm/leaf	RM215	RZ404
Osa09LNT0451200.1	9	nan	Morphological trait	Root	RM215	RM205
Osa09LNT0451200.1	9	nan	Morphological trait	Root	RG667	RZ404
Osa09LNT0451200.1	9	yldp9.1	Morphological trait	Seed	RM242	RM205

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus