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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0452100.1

GGATCTGAATATCTGATATTTATGTTAACGCATGATGGGTAATATACATTTACTTCATGAATTCCTGATGTAGATTGAAATCTCACCTATACTCCTACATGACATACATACGTGCGCTTCTATTGACTCGGTTTGATTTATCTGATCTATTAGTAAATGTATGTGTGCATCCCTCCTTTCAAACCTCACTCATATTGCATCTCAACCATTCAACCTTAATGCTGGCCATCTGTGAAGTACACATGTAAATTCACACTGCTAAGGGCCTCTTTCAAAAGTCTTTCCAGGTACAAAGGATCAGAACCAAAGAAGAGTCACTATCCTTCTGTACAAATCCCATTAAGCCCATCGTCCCAGTAAATCAGATTTCGGGCTCAAAATTGGCCTGCCCGAATGTCTCTATCGATGCGCTCCGCGTTAAGCGTTCCTGGTAGCTCCCGGAAGTCTTCATTAAATATGGAGTATGCACTGACATCACCTTGCTGTCGTCTTCCAAGATTACAAAGAATGACCAAGAAGCCTGTACCAAGTATAAATAAAGGTCCAACGTCGTACATTTGAGCAATAGGTGCAAAAAGGAACCACATAGCGATAAGAACCCATGCTTTGATACCCAGAGAAAATAGCACCATCAACAAGATATCAGGTAATCTCAATTTGTCTCGAAGAAATATAAAAAATTTTCTCTTCCACCAGGTGGTTGTTTCTGGTATTTTGAACTTCAGCTCTTCCTCTTCATCATCGTCATCGTCACCATCACCGTCACGGAGATGATTAGCAGGTGGCTTAGGTGCCACGGCCACTATAAGACTATCTAAAGAAATTGCAGAAGGAAGGAAGTATTTAACTGTATTCCACAAGATGTATCAAGTGCAGAAGAAGAAGAAAAAAAGTAGGGTCTTGAAGAGACAACGAATTAACCATCCATCCTAGAATAGTCCTGTCTTCCACATAAGATGTATGTGAAGAGAAAGAAAAAGAATACTAGTATACTATACCCCCGTGGCGGAGGTTGACATGGGCGTCGTCTTGGCACGGGAGATTCCTTCCTCGCAGGACCAGGCGGAGGCGGTCTTGTGGGAGATGTCGGTCGTGAGCGATGTGGCGGCGCAGATCGGCAACCTAGGGGCGGGGAGGGGCCGGGGAGCAGTAAGGAGGAAGGATTTCTGAATTAGGGGTGGGTCGGGTGGTTTGTTACCGAGATAAACGGAGGGAGGCGAAGGGTGGTGGGACGGGACGGGCCGACGGCGCGCAGCGTCACCTCGACCATCTCCGCCTCGTCGCCGGCGGCAGCCATGGCCATGCCTGACTCTGATCTGTCCCCGTCTGTCTACTCCCCTCTCCCTTCC

Coding Potentia
Explanation CPC Score
noncoding -1.1239
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0452100.1 9 22926579 C T
Osa09LNT0452100.1 9 22927530 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0452100.1 osa-miR5798 Cleavage 5.0 18.086 1 21
Osa09LNT0452100.1 osa-miR171a Cleavage 5.0 11.443 1 21
Osa09LNT0452100.1 osa-miR171g Cleavage 5.0 11.443 1 21
Osa09LNT0452100.1 osa-miR171i-3p Cleavage 3.5 11.443 1 21
Osa09LNT0452100.1 osa-miR5490 Cleavage 5.0 10.114 1 21
Osa09LNT0452100.1 osa-miR5497 Translation 4.5 18.312 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0452100.1 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0452100.1 9 qTN-9-2 Morphological trait Culm/leaf RM215 RZ404
Osa09LNT0452100.1 9 nan Morphological trait Root RM215 RM205
Osa09LNT0452100.1 9 nan Morphological trait Root RG667 RZ404
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus