>Osa01LNT0002800.1

GCGTAAAGGCGTAAATTTGAAGATTTCTGAATCCTAATGTTAGTTGGAGTCGTCTCCTTCCTGTTCTTAATAAGACCTTCTTTGAGGGCAATTACGGTAGTCGTGGGTCGTATATTCCTCGCACCATCTGCAGCGCCTTGCAACTCTGGGTGGTTTTGTAGTCTTCTTGTAGTACTCGATCTCAGCTTTCAGTTCATCATTCTGCTTTTTCAGGGATTCAATGTCCTTGTTCTTCAGCTCCAACTGTAACCTGAGCTTCTGATTCTCTTCATGCTCGAGCTCCTTTGTCTTGAGAGCGAGCTGCAACCTCAGATTCTCATTCTCTTGAGAGATCCTTTGAGAATCCTGAGCCAGCACAAGAGCTTGAACTTCTTTGCTCTTGATTTCAACTTCAGAAATCTGCAGCTGATGAGGTGTCTCAACTTCAGAAATCTGCAGCTTATGAGGCGTCTGAACTTCAGAAATCTGCAGCTTATGAGGTGTCTCAATTTTAGAAATCTGCAGCTTGCCAGGTGTCACGGTTGCTTTCCTCTTCCTTCTTTCCAGCACTCCACCAACCTGAACATATTCATCTTCAGAAACTTCCTCACCAGGAGAGGGAGAGCTACCACACGAACGCGGGCTACTCTGCCTCTCCTTCTCGCCGCATGAGCCCTTCCCCTC

Explanation	CPC Score
noncoding (weak)	-0.554743

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0002800.1	1	2576228	T	C
Osa01LNT0002800.1	1	2576180	G	A
Osa01LNT0002800.1	1	2576841	C	T
Osa01LNT0002800.1	1	2577282	G	C
Osa01LNT0002800.1	1	2577331	A	C
Osa01LNT0002800.1	1	2577718	T	C
Osa01LNT0002800.1	1	2577975	A	T
Osa01LNT0002800.1	1	2577478	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0002800.1	osa-miR1874-5p	Translation	4.5	15.316	1	24
Osa01LNT0002800.1	osa-miR2093-3p	Translation	5.0	11.901	1	20
Osa01LNT0002800.1	osa-miR2919	Cleavage	4.0	19.029	1	19
Osa01LNT0002800.1	osa-miR5150-3p	Cleavage	4.5	19.98	1	24
Osa01LNT0002800.1	osa-miR5150-3p	Cleavage	4.5	22.505	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0002800.1	1	qFLL-1	Morphological trait	Culm/leaf	RZ543	RG532
Osa01LNT0002800.1	1	qFLP-1	Morphological trait	Culm/leaf	RZ543	RG532
Osa01LNT0002800.1	1	nan	Physiological trait	Source activity	RG532	RG472
Osa01LNT0002800.1	1	gp1a	Morphological trait	Panicle/flower	RM1	R753

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus