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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0042400.1

CCCCTTACCGTACCCCCGCGGTAAGCGCGGTAACCGCGCGGTTTACCGCGGTAAATGCAACCCTGGTTACACCATGAGAACTTCAATATACAACATACAAAAATACCACACTTGGCATGATTTCAGAAACCCTAAATCAAAAAATCCCCAAAATTAGAACCTTGGCAAATCCCTAAGCGAATCGGATTGATGACTTGCCGATTTGGCAAATCGCCGCCATCATGTGATGTGATCACGGCATCCGCACCGCCGTGCACGCACCCTAGCCATCGCCATGGACTGGCCTTGCGCCCGTCTTTGTCGGTCGCGTGAGGTCGAGGCTCGTCGTCGCGGCATTGGCTGCGTGCGGAGGAGAACCAGGACGGCCCCATGCACGACATCATACCGGGCTCGGGTGGCATCAGTTCGTTGCACGAGATCCGAGTGGCTCGGACAGCCGTAGCTTCACGCTACGCGCCATCGCCGCTCGTCAGAATCGTCGCCGCTGCCGCTTTTCACGAGAGAAAGGAAGGGACTTCGTACTGTTGCTGCTTGTTGGAAACGCTGTCGCTTCGCCGGAATCGTCGCCGCCACCATCACTCCGCCCGAATCACCGCCGCCGCCATTGCTTTTCGCGAGGAAGAGGAAGGGGATCGGGGAAATGATTTTAGGGTTAGGGTTGGGCTGCCGAATTTTTTTCCATGTTGGAATCAATCGGGATCGTCCATAAGATCGGACGGCCTCGGCGTCTCCCATGTCGGGCTGGCGCCATTGCCATCCTGCCGTGCTGATGGGCCGCCTCATGGGCCACGCACGCGTACTCCAC

Coding Potentia
Explanation CPC Score
noncoding -1.39394
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0042400.1 1 33705573 A G
Osa01LNT0042400.1 1 33705652 A G
Osa01LNT0042400.1 1 33706009 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0042400.1 osa-miR5821 Translation 4.0 22.522 1 21
Osa01LNT0042400.1 osa-miR5832 Cleavage 4.0 20.636 1 21
Osa01LNT0042400.1 osa-miR1437b-3p Cleavage 5.0 24.844 1 24
Osa01LNT0042400.1 osa-miR2090 Cleavage 4.0 24.583 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0042400.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0042400.1 1 qCC-1 Physiological trait Source activity RG541 RG101
Osa01LNT0042400.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0042400.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0042400.1 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
Osa01LNT0042400.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0042400.1 1 gpy1 Others Others RG541 RG101
Osa01LNT0042400.1 1 nan Morphological trait Root RM212 R2417
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus