© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0042600.1
GTGGAAGTTTGATATAGGCAATGAAACAGTAGGATAGTTGCTGGTTCACTGTAATATTCGAAAAATGATATATTTTCAGAACTGAATATTCAAAATGAAGGAATTGCTCTTCAGTGCTCAAATACAGCCATAATATTCTGTAGTTAAGCTAAAGAATTGCTTCGGCTCCTTTGTGTTTCATGAAATCTATTGAGTGACACCGAGAAGAAAGATCAGCGAAAGGAAACTCACTTGATTCAACATTGCATTCTACTTATCTGACTTCCTGCTTATCACAGTTCATCCACACTCCATCCTTGTCACAGGGGAAAGATTCTAATTTGCTACACCTGAAGACCTCCAGGAAGGTCAGGTTTGGGAATGCCTCATGCAATTGGGTCCATTCCACCTCTAAGTCATCTAAGAATTTCAGGCGCAATATCTCAACTTTCCACATCTCTGACGTGCTCCCATCTCCAAAAGTATTTAGCATTCCGCCTGTAAAATACAGTTTCTTCAGTCCCAGTAGCTTACTCGGACTCAACCAGCTTGGTATCTTCTTTCCAGGGAAGCAACGAAGGTCTAGCTTTTTAAGATTTGGAGGAAGGGATAATGAAGTTAACATTGCCGTTGCCACAGAAGCTTGTTGGTCCTTTCCTTTCGACAGCACTGATACAGCCCATGTAATAGTCAGTGAACGAAGGCCTTTGATGTTCTCAAGTTCATTCAGTTCATCTCCTGTCACTGCAACTTTACTTCCAATATATACGCTCAGTTTGTTCAGTTTCTCCAATCTGACCAACTCCGCCACTCGACAATTATAATTGCTTGTGGAACCACCAATAACAAACCCTTTCAGCACTTGGAGTTCTGTAAGCAAACCAATCCCCCTTGGCATGCCCTCTAGCAGGTAGCATTCTGACACATCAAGGTGGGTGAGCATCTGAAGAGAGGTGATGCTCTCAGTCAGCCTCTCAAGATTATGACAAGCATGAAGATCCAGGATCATGAGATTTGAGAGTTCACCAATAGAAGCAGGAAGCGCAGTTATTCTGGAGATACCCCGTAGGCAGAGATATTTTATTTGTTTGGACAACTGCAGTCCTTCCAGAAATTCAGTACTGTCAACCTCGATATGGTGTCGATACAAGTTATGCCATCGACCTAGTTGGAGCACCGCAATCTTCCTCAAATCCAAGAACCAACTCTTGTCAAACTGGAGGTATCGCTCATTCACATTAAATATTGTGAGCAGGCCGTCTGTATTGGGTTGGTTTTTGACCGGTGATATTTCTATTTCTTGCTTATATTCTTCAACTAGACAAGCACGGTGAGTTCCTGAAAAGTCCCATGTTGCATTGCCTTCCGAATCAAATTCAAAAAATTGTGCTTTTCTTGCAACAGTAATCAACATACGGCGAATCCAAGGGTGCAACTTACATTCACTGACGCTACAACTGCGTTTCACGTGCACAGCTTCAATCATATCCCTAGCAATAAGCTTGTCAAAGCAATCCTTCCCAACATCTTCCGCAGTTTGATTTCTTGTGGCTGCTACTAAGCCCTCACCTATCCACCAATGGATCATGGCCCTCTTGCTGATGATAGAATTTTCTGGGAAGATAGAGAAGCACAATAGGCACAGTTTGAGCTGCAGATCAAGATTATCATAACTGAGCTGCAAGGTAGACATGGTGGAGTTTTCAAGGATTTTCCTTTCGATCTCCAGCCTTCTCCATTCCTCTGAAACATTTGCTGGCAACAATTTAGCTGGCGAAGATGCTGGTAAAAGTGGAGGAACTGATGGCTTGATCACAGGAACATGAAGAGGAAGTTTCATGCGATCTTTTAAGTTGGACATTTCAGCATTGACAATTTGAAGCTTCAAACATATTGAATTCAGGTGACTTTCTTCTTCTACAATGTCATCCAAGTACCGAGCTATCCCTCCAAAGTCATCGATTATCTCATTTTCCCATCTTGATACCCTCTGTAGTATATTCTCCACTTCGTAAGCTTCTTTCTCAATATTTTGAAACAGATGTTTAATCTCTAAAAATGAACTGTCCTCATCTAGTTTTAGAAAAAGAAGTCTTGCTTTTGATAATTGCATTAGAAAGGGGGACACAACTTCGTCCAGTGCTCGTTCCTGTGACATCGTGATTTCTGCAACTGCAATCACTCAAACGAGGGTTCGTTCCTTTGCTGGTAAGAGTCAGCAGACCAGCACTGCCAATAGTTGCCGGCTGAAGCTATCAACTGCGAGGCTTTATGAGGTTCTGTTTTGAACAAATGATGAAAAACAGCGGAAGACAAAACATATATGATACAATTGCGATTATAAAATTGATAAATAAATAAAACATGAATATACAAGAAAGGGCTTTTATAACACAGAAAATTTTATAATAATACTCCCTCCGTATTTTAATGTATGACACCGTTGACTTTTTGAACTATGTTTGACCATTCGTCTTATTTAAAATTTTTATGTAAATACAAAAATATTTATGTCACGTTTAAATAATATTTGATGATAAATCAAGTCATAATAAAATAAATAATAAATACATAAAGTTTTTAATAAGACAAATGAACAGCGTTATACGTTAGAATACGGAGTGAATACTGTACAATTAGTATAAAACACTGTACTCACCTACCCGGCTACCACCCTCACCGGCGTCGGCGCGGGGCAGAGAGTGGCGGACACGAGCTTAATCGACGTTAGCCAGGAGGGCGACAGCCGCGGCGGCGGCGGCGGCGCGAGTTCGGCCGGCGGGGCACCGGCAGCAGCTCTGGGTCAACCGACCTGAAGGGGCGGCCACAGTTCGACGGCGGCACCGACCGGCGTCTGCGCGCCCCTCGACCTACGAGAGGCGCGGCCACGTTCGACCGCGGCGCGGCAGCGGAGCGAGGTTTTTACCCTCGTAATCGTTGAGACCGAGGGTTTGCTCCTCTTGAATCCCCTATCTAGATTCTCATCATCTAGGTCGACCCGAGTCCCCGACCGACGTGAGGGGTGAAAGATATGTACTCTGTCACTGCTTTTTCTTGTAGTGAATTCCCACTTCTGCACTGTTATCTCTCCTTGATCCTTCGTCCCTTTAGGAAGACACAGGAGACGAAGACGACAACAAAGACATTGGCAGGTCCAGTGGAGACGACGCAACGACCCCCAAGTGGTCAATGTTCTCCTATGGAATATATTCCATGAAAAAACTAGAGAAGACGACCTCTTTTAAAATTTTAATTTTAATCTTTTATTGCAGTGTTGTCCCACACACGGATCACGCGGCTTCATCTCGTTTTCCTCCCCCACAGACGGGGAACCGCGTGAGCAGACTCCAACCTCTCACCTTAGTCACCTAGCT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0042600.1 | 1 | 33818056 | G | C |
| Osa01LNT0042600.1 | 1 | 33818539 | T | C |
| Osa01LNT0042600.1 | 1 | 33820517 | G | A |
| Osa01LNT0042600.1 | 1 | 33820555 | T | C |
| Osa01LNT0042600.1 | 1 | 33818792 | T | G |
| Osa01LNT0042600.1 | 1 | 33819565 | C | T |
| Osa01LNT0042600.1 | 1 | 33819470 | A | T |
| Osa01LNT0042600.1 | 1 | 33819289 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa01LNT0042600.1 | DTM_#DNAt_MULE_japo_Os0084 | Chr1 | - | 33819263 | 33819612 | 349 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0042600.1 | osa-miR5532 | Cleavage | 3.0 | 16.867 | 1 | 22 |
| Osa01LNT0042600.1 | osa-miR5799 | Translation | 2.5 | 8.582 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR812t | Translation | 4.0 | 14.467 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR812u | Translation | 4.0 | 14.467 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR5806 | Translation | 5.0 | 18.835 | 1 | 21 |
| Osa01LNT0042600.1 | osa-miR6246 | Translation | 5.0 | 17.478 | 1 | 23 |
| Osa01LNT0042600.1 | osa-miR166d-5p | Cleavage | 5.0 | 14.653 | 1 | 21 |
| Osa01LNT0042600.1 | osa-miR812a | Cleavage | 4.0 | 11.563 | 1 | 22 |
| Osa01LNT0042600.1 | osa-miR812b | Cleavage | 4.0 | 11.563 | 1 | 22 |
| Osa01LNT0042600.1 | osa-miR812c | Cleavage | 4.0 | 11.563 | 1 | 22 |
| Osa01LNT0042600.1 | osa-miR812d | Cleavage | 4.0 | 11.563 | 1 | 22 |
| Osa01LNT0042600.1 | osa-miR812e | Cleavage | 4.0 | 11.563 | 1 | 22 |
| Osa01LNT0042600.1 | osa-miR1435 | Cleavage | 4.5 | 13.985 | 1 | 20 |
| Osa01LNT0042600.1 | osa-miR1436 | Translation | 3.5 | 9.045 | 1 | 21 |
| Osa01LNT0042600.1 | osa-miR1438 | Cleavage | 3.0 | 13.965 | 1 | 22 |
| Osa01LNT0042600.1 | osa-miR1850.1 | Cleavage | 2.5 | 11.382 | 1 | 21 |
| Osa01LNT0042600.1 | osa-miR1866-5p | Translation | 5.0 | 15.015 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR1868 | Translation | 4.0 | 16.265 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR812g | Translation | 4.0 | 8.582 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR812h | Translation | 4.0 | 8.582 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR812i | Translation | 4.0 | 8.582 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR812j | Translation | 4.0 | 8.582 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR2055 | Cleavage | 4.5 | 21.166 | 1 | 21 |
| Osa01LNT0042600.1 | osa-miR396f-3p | Translation | 4.5 | 9.76 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR2929 | Translation | 5.0 | 15.347 | 1 | 21 |
| Osa01LNT0042600.1 | osa-miR2931 | Translation | 4.0 | 13.985 | 1 | 20 |
| Osa01LNT0042600.1 | osa-miR1862f | Cleavage | 4.0 | 14.19 | 1 | 20 |
| Osa01LNT0042600.1 | osa-miR1862g | Cleavage | 4.0 | 14.19 | 1 | 20 |
| Osa01LNT0042600.1 | osa-miR812n-3p | Translation | 4.0 | 14.467 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR5148a | Cleavage | 3.5 | 14.851 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR5148b | Cleavage | 3.5 | 14.851 | 1 | 24 |
| Osa01LNT0042600.1 | osa-miR5148c | Cleavage | 3.5 | 14.851 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0042600.1 | 1 | gpy1 | Others | Others | RG541 | RG101 |
| Osa01LNT0042600.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0042600.1 | 1 | nan | Morphological trait | Root | RM212 | R2417 |
| Osa01LNT0042600.1 | 1 | An10 | Morphological trait | Panicle/flower | nan | nan |
| Osa01LNT0042600.1 | 1 | qCC-1 | Physiological trait | Source activity | RG541 | RG101 |
| Osa01LNT0042600.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0042600.1 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Osa01LNT0042600.1 | 1 | qLRC-1 | Resistance or Tolerance | Drought tolerance | RM237 | RM302 |
| Osa01LNT0042600.1 | 1 | dth1.1 | Physiological trait | Flowering | RG541 | RG109 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)