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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0043100.1

AGTCTCAGAGTCAGAGGCAAGAGAACCGCAAAACACAGGACGCGCTCCGCTCCTCTGCCGCCGCCGCCGGAGCTCTCACCTCCAGGGGCTCTCGCCACGAGCCGCCGGAGCTCAACCCGTGCCGCCGCACGGGCGCCGGCGGACGGCTGGAGGCCGCTGCTGCATCCTTCTACCGCCCGCATTGCTTTTGCTCCCTCCTCCTCGGCTCCTCCCTGTCCAAACACCGGCAGATTCCTACTCAAGAAGGAGGAAGAAAGAAAACTTGCCTTTGTGGGGAATATCACCTGCCTCTGCTTCATGCGCATACTTTTGGCTGAATAGCTGTCCAGCAGATCATCAAGGTCGTACGCGATATCCTTGAGCTTCGCTAGCCATCCCCTCACAGATGCATCTGTCAACTGCTTCTCCTCAGCGTCGTCAAGGAAAGCCTGTAACTGAGACAGTGTGGAAGAGAGGCTCTCTAGCTTGCCATGTATGCCTCTCCAAGATATGAAATGATCAAGGGTTGCTTCTGACAATTTCTGGAAGAGGGTTTGCATGAAGGCTCCTAAAATTGCTTCTGCTGCCATGGCAGTTTTTTTTTTTTGTCTGTGTGTTCCCCTCTTTTGCCCTTTTAGCCTGTAAGAAGTAGAAGTGAAGAAAGACTGAATTAACAAGGGTTTGGGACGTTGACCTGTAAGGTGGTGTTTTTCCACGCAATTTCAGACACGATATGCCCCGTAAACAATCTCTTTCCATAGATCATTAATCACTTAAAAGCTTA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.866691
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0043100.1 1 34295799 A G
Osa01LNT0043100.1 1 34296689 A C
Osa01LNT0043100.1 1 34296158 G A
Osa01LNT0043100.1 1 34297051 T A
Osa01LNT0043100.1 1 34297274 T C
Osa01LNT0043100.1 1 34297483 T G
Osa01LNT0043100.1 1 34298173 T C
Osa01LNT0043100.1 1 34298337 A G
Osa01LNT0043100.1 1 34298624 T C
Osa01LNT0043100.1 1 34298932 T C
Osa01LNT0043100.1 1 34299288 G T
Osa01LNT0043100.1 1 34299463 T C
Osa01LNT0043100.1 1 34299527 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0043100.1 1 nan Physiological trait Source activity RG374 RG690
Osa01LNT0043100.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0043100.1 1 nan Resistance or Tolerance Drought tolerance RG690 RG810
Osa01LNT0043100.1 1 nan Morphological trait Root RM212 R2417
Osa01LNT0043100.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0043100.1 1 qLEJ-1 Morphological trait Shoot/Seedling RM212 RM297
Osa01LNT0043100.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0043100.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0043100.1 1 Pi35(t) Resistance or Tolerance Blast resistance RM1216 RM1003
Osa01LNT0043100.1 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
Osa01LNT0043100.1 1 dth1.1 Physiological trait Flowering RG541 RG109
Osa01LNT0043100.1 1 ng1 Morphological trait Panicle/flower RG374 RG394
Osa01LNT0043100.1 1 sf1 Morphological trait Seed RG374 RG394
Osa01LNT0043100.1 1 sf1 Physiological trait Source activity RG374 RG394
Osa01LNT0043100.1 1 ng1 Morphological trait Seed RG374 RG394
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus