© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0003000.1
ACAGGAAGTTTGTATGGCTGAATATGAGGCACTTCCAAGGGTTCATCACCCTTGTCTCAAGAGTTCAATTTAAGTACAAGCAAAACCCACTATTTAAGCCACTAAAAGAAAAAAACAGAATTTAAATGGCACAATCGGGGTAAGAGGATTATTGGTTATGTCACCCCACATAACTGAAACAGATGTACTTCGATCGTTGTTTATCACACCCAGTTCTTGCATATTCCAAGTTTAACATGTTGATCGATCTGAAGTCCTGAAAAGTATTTGTATTGAGTACTGGGAACGTCTATTGGTCATGCTGTTCAAGATATTTACATGGAGGAGCCCAACGGACAAGAACATGTTCAAAAACTCGTTGGATTTGAAATCTGCACAAGCTCTCAGAGGCTGCTCAGCCTGAATCAGTCTTGGAGATAGCATCACACTATGCTGCAATCGAGGCAGCATTTACACCCACCGTTCTTACCTCCAGCAGTGGCAAATTGATGTTAGTCTTAACCTTGAGTCAGGCAACTTCACCTGAAGGGATATCTAGTTTTCGACAGTGCTGACCAAGTTTCCAAATTTTTGCATTTATATTAAGCTGATGAATTCAAGCTATAATCTCGGTAAACGATGTTGCTTCCTTCTGTTAGGACTGCACCAAGCTGCATTTACCACTGGACTGCATTTTGAATACCATTGGCTACCACTTACCACAGAAATTGAATTGTTTTCCTGTAACATTTCAGGTGCACTAGTATCACCATTTCCTTAAGTGCGCTCCACTCTAGTACTGCCTAATTATAGAGAGATTCATCTGGAAAGATATCCCTGCCATCTGCACCAACTGTAACAACATGGACGGCAAGTTGTTGGTCTTCCAGGAGGCTCATCCTGAATTGCTTCGCGTTGTGGCAATCGACCATGTAGAGTCTCTTTAGTGAGATTAGATTCTCTGCCTGATACAGCGCTGGACAGTCCTGCGCAAGCAAGTCCTTTAGATTACAGAGATTGGAAATTCTCCTCAAACACCTGTTGTTCTTGACCTTGAGCCATAACACTGAAGGAAGGTTGTCAACTTCTTGCAGCGTGTGAGCACCTTCGATATGGATTCTTCTTAAGTTAGCAATCCTATGCAAGTCTTCAGGGAGAGCCCTTAGTTTTGGGCAGTCGTTAAGAAACAAACGCTTAAGGCAAGGCATCAGAACAAGCTGTTCAGATTTGCCACACAAATTCCATGTGTTGAGAGACCAACTTTCCAAATTGCTCATGTTAGTGATGAGAAGCAATTCGAGTTTTGGAAAAATAGTTATATGCTTTGCGCTATTGACGCCTTTCCCTAGCAGCTCTGCACCCATATTCACTATTGCATCTGCGCCTTTAATCTTAAAAACTAGCAGTTCTGGCATCTGGCCTGCTGGTGGAAGCACTGAACATGAAGTGCAGTCGTTGAGGTGCATATGACCCAAATTTGGCATCTTACGCTCTGGTTCTGAGCACAACCAATCTGGGAACCTTACACCAGGGAACCCGACAAGAAATATATACAGTAAGCTTGGCGATGGAATTAGCAGTTCGTAGACTTGCTGAATTCTCTCAATCTCGTTGGTCTGATAATAAGTTTTATCATGACCTCCGATTGTGCAACCGAGCCACAATTCTCGAAGATGAAGACAGTTCTTGAGTACAAATGAACCCCCTGGTGCTGCTTTTTCTAGCTTCACAATCCGGAGACGTTGGATATTGGAGAGACATTGGAGTTCATCTAGTCTGAATCCAGTTCCACTGTCAAAAACTCCTCTAAGGTTGTAGAGTTGCTGCAACTTTGCAACTCCTTTTGGAACATGGTCGATTGCAGTCTGTTCTAGCTCTAGGAAACTTATGTTCGACAGTCTCATTAAACTATCTGGCAGGCTATCCAAATGTATGCAACCATGCAAAGAAAGGTATTCAAGGCTGGTAAGTTTTCCTATGGATTCTGGGAGTTTCTGAATTTTTGTATAGCTTAGATCTAGAAGCCTCAGTAACAAGAAGTTTCCCACTGACTCTGGTATGATTTGGATGCTTGTTCCACTGAGAACTAAGACACGGATATGCTTGAGTTCTCTGAAAATGTCCTTATTAATTTTCATGAAGTTTTTGTTATCAAAAACTAGGAGGCTCCTCAAGCACTTTTGCTTTTCTATAGCAGGTATTTCTTCTACATCATTGCTGATACATAAGTGGCGTAGATTTGGTAAGGCTTTGCTATATTCCATGTTCATGAATATGGAGTGATCCTTTGTCAAAAATTGACCAAGTGACCTCAATAGATCATGCATTGTTGACTCGCCTTTGTCTACAAACTCTGGTCGTGGCTGCAGAAGATTCCTTCTGATTAGCTCATGGTAGTACTCTTCAGCAACCTCATGTATTGAGTACCCATGCACTTCCGTCACGAAACCTTCAGCAACCCACCAGTAAGCGACAGCATCACGACGTATCACAAAATTTGACGGCAACAAAGCACACCAGAGAAAGCATTGTTTAAGTTCAGGGGGTAAGTTGCTGTAGCTTAAGTACAGAGGGCCTCCTAGTTCTCTGGGAAGTCCATGAATGGACCACTTGCTATCTCGGATACTCTCCCATTCTGCCCTTGTTCTTTTAGTAGATAGAACACCTGCAACAACTTTGATGGCAAGAGGAAGGCCATCACACTTTTTGACAATTTGATATCCAACACCACTGAATTCTCTGCTTTGCTCGTATGGCCCTAATGACATCTTCATCAGCAGTTCTAGGCCATCGCAATCATTCATTTTGTTTACCTTGTGGGTATAAGTTGCATGCATTTCAACCAAAACATCCAGGTTTCTTGAGGTCACAAGGATATGAGAATTCAAACCTCTCAAGAAAGGCAAACGAAGAAGATCAATCCATACATCAGATTTCCAAACATCATCCAGCACAAGAAAAACACTCTTCCCTCTAATAGTGTCCACTAGAAGCGGTAGAAGCTCAGTCTTAGTCTCCAGCTGATCACAAATTCCTCCAGCCATTCTGATTGCCTGTTTTAACAAACTGGTCTCTGTGTAATTCTGAGAAATGCACAACCATATATGAACTTGGAATTTCTCCCTTATCCTCTGTTCATTGTATATCTTTTGAGCTAATGTTGTCTTACCGATGCCTCCCATCCCCTGGATCCCAAAAACAGTTGACCTGCTTTCATTGTAGTTACTACTAACAATCATTTTGACGATGTCATCAATAGCCCTTCTGATATCTTCTCCAACCACCTCAAGTTCATCTACAGGAGATGTCTGACTTCTGTCAACAATTGTTATCTGGATTTGTTGCCCGTTGGTTCTCTCCAAGCCAAACATCTCTTTGTTCATTTTAATTTCTTCAAACTTTTCATTTATATTATCAATTCTTTTGGCAATCATGTGATCAAATGAAAACTTTGCAAAGCTAGAGAACAAGGGCTGATTGCAACATACCGGCCTTGGTGGCAGCAAGAGCTTCTGTGAATGAACCATGAAAAGATCTACGATGTCATCGACATCAAACATAACATCTCTCATGTTCTTCCACCATGAATCTATCCCTGGATCCTCCATGGCCAGAGCCTCAGCATCCTCATGAACAGCGTTGAAGAATTCCAGATTTTTCTTCAGGCTCTCAATACCCCTTTTCACACTTAATGTCATGATAACCTCATCCTCAATAAGTTGACCCAGCTTTTCCAAGAATTTCCAAGCGAGAGCATCCAAAACTGTGCCCATAGTGCTAGAACCTACGGATTCCCACTGGATCTCTCCTATGGGAGATGCTTGAAACTGATGAGAACAGAGAGGGCAATGCAGATTGCAGAAGAGAGCTGTTATAGATTCTCCTCCCTTTCTTGCCACCAACTGCCTTTGTCACAATGGACATTGACATTCTCTATTGCAAAACGTCTGAAAAACACAATTGCAAGGGGATTCAAGTTGAAAGCTCTTCCAGGCTGTGTATTCTTTTCCTTTCATCCACTTGCTAATAATAATTTGATTTCATTGCAGCAATGGCGCCACTTGGTGCTTTACTTTCTTTGCCTGTTTACCACCTAAGAAACCAGGAAGGCCATGGTGCTTCTCTACCTGCACTAGCAAGAAGACCCAAAGAAGTGTACTTTTTAAGCGAATTTAGCTGACTGTTACCAGCAGATTTTGCATCAACCAATACAGGAATCCTATGCCAAAGCCTTTATAAGTCTAGTTAAAAGCACCGGAGCAGAGTTCTCCTTTTTTCAGGAATATGCAGAAAATCTTTTGCAGAGTTCAGAGAAAACAAGGTTCTCTGAAACAAGGTTAAGAGAAAACAGGAATATGCAGAGTTCTCTTTATGCATCTTTGCATTAAGATTGGGTAAAACAAGGTTAAGAGAAAATGGTACATTAGATCACCAGAGAGCAGACACCATACTAAAGGAAAAATAGAGTCAAACCGCCGCTGGGCATGCAACGCACGCAGGAATCTCCTGGGCATTTCGTCAAACAGCTCATCTACGCAAGAAAGAGAGATGCTTCTCCTAGCGTAACCAAAGACGGCGACAACGACCCACAAGCAAAGATAAGCAGGGGCTAGGTCGAACTGAGCCTGACAAGTTGATTCATCTCGCACGTAACGTAACGTAACGAATGCGGTTCGCTCGGGGAGAGCGATGCGCGAATGGTGTTCGATGAAATGCCCCCCACCGCACCCCCCC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0003000.1 | 1 | 2681929 | A | T |
| Osa01LNT0003000.1 | 1 | 2684049 | A | G |
| Osa01LNT0003000.1 | 1 | 2684461 | C | G |
| Osa01LNT0003000.1 | 1 | 2681202 | G | A |
| Osa01LNT0003000.1 | 1 | 2681705 | C | T |
| Osa01LNT0003000.1 | 1 | 2681857 | C | T |
| Osa01LNT0003000.1 | 1 | 2682186 | C | A |
| Osa01LNT0003000.1 | 1 | 2682721 | T | C |
| Osa01LNT0003000.1 | 1 | 2682831 | C | T |
| Osa01LNT0003000.1 | 1 | 2683065 | A | C |
| Osa01LNT0003000.1 | 1 | 2683697 | T | C |
| Osa01LNT0003000.1 | 1 | 2683149 | C | T |
| Osa01LNT0003000.1 | 1 | 2683909 | A | G |
| Osa01LNT0003000.1 | 1 | 2684973 | A | C |
| Osa01LNT0003000.1 | 1 | 2685069 | T | C |
| Osa01LNT0003000.1 | 1 | 2685107 | A | G |
| Osa01LNT0003000.1 | 1 | 2685936 | C | T |
| Osa01LNT0003000.1 | 1 | 2685996 | C | T |
| Osa01LNT0003000.1 | 1 | 2686179 | C | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0003000.1 | osa-miR5542 | Cleavage | 3.5 | 11.206 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR5806 | Cleavage | 3.5 | 16.488 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR6245 | Cleavage | 5.0 | 9.323 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR5337b | Translation | 5.0 | 18.523 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR5512b | Cleavage | 5.0 | 17.518 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR395t | Cleavage | 4.5 | 7.711 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR395t | Translation | 5.0 | 13.973 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR395c | Cleavage | 4.5 | 7.711 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR395u | Cleavage | 5.0 | 7.711 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR395o | Cleavage | 4.0 | 7.711 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR395w | Cleavage | 4.0 | 16.88 | 1 | 22 |
| Osa01LNT0003000.1 | osa-miR395w | Cleavage | 5.0 | 7.711 | 1 | 22 |
| Osa01LNT0003000.1 | osa-miR1870-3p | Translation | 5.0 | 17.039 | 1 | 24 |
| Osa01LNT0003000.1 | osa-miR812o-3p | Translation | 4.5 | 14.353 | 1 | 24 |
| Osa01LNT0003000.1 | osa-miR5147 | Cleavage | 4.0 | 17.08 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR5339 | Cleavage | 5.0 | 17.337 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR5499 | Translation | 5.0 | 19.31 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR5512a | Cleavage | 5.0 | 17.518 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR2275d | Cleavage | 4.5 | 22.025 | 1 | 22 |
| Osa01LNT0003000.1 | osa-miR5806 | Translation | 5.0 | 11.264 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR5337b | Translation | 4.5 | 18.836 | 1 | 21 |
| Osa01LNT0003000.1 | osa-miR1426 | Translation | 4.5 | 15.15 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0003000.1 | 1 | qFLL-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0003000.1 | 1 | qFLP-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0003000.1 | 1 | gp1a | Morphological trait | Panicle/flower | RM1 | R753 |
| Osa01LNT0003000.1 | 1 | nan | Physiological trait | Source activity | RG532 | RG472 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)