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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0044900.1

AAAAGTACCAGTGGGCAATTTTGTTCATACCATTGGAACCAAAGTTCCTTATTGAAATATTCCTTACATGTCAGAAGATCTCCCAGTAATTTTCCTTCAAAGGTAAACATCAGAAAACAAGGCTACCAACTAGGAATGATGTTAAAGGAACAGTCAAGTTGTCATCCAAATGTGTGCTGATGGGATGGGACTCTACAAGTGCTGCAGTTACAGAAACAACAAGGAAGCCAAAAGCCAAGGACCAGCTTTCTTCAATGAAACCGAATGACTGGAAGTAATGCATATACCCAATTGAAGCCATGAAACCAGCTAGTGCCATTGCTATGCTGCCTGCATATGACTTGTTGGGGTTGTATGGAAGCTTTTCTTGGCCAAGACGTCTCCCCACTATGTCTGCTATTCCGTCCCCAGCACATAAGTTGCAAATAAGGGCTATAGCGATTGGAGAGGTTCTCCAGAATATAGAAGTGGCAAAAGTTATAGTGGTAGCATAATACAGTGGACCCTTGAGAAGTTCCCTGTGTTCATGAGAAAATGAAGTCTAAAGGATCATGACCTGAAGCAGCAGCAGCAGCAACTATAGATATTCAACAGAAACAAAGAATAAGCAAATCTGTGCCAAAAAGAAGGCATAGAATAGGAAAAAGGAAAATCAGAGTGAAAAATGCAAAGAATAAAAGGCAAATATGAGCAGAAACAAGCTTATTAATTATGTAATCGCCAAAGGTTGGTGTATGCGAGTATACAACCTCGGGTCTCCAGATCGGCTCATTGATTTTACCATAGCTTCATTTTTCATTACTCCTAACCCCAGCAGAAGCATCCTTATAATATTAATCCCTGGTGCTACTGCAGCCAGGAAAGGAGCATAGCTTCCTGAGCTGAAAAGAGGCCAAAAGAGCAAGAATACCATACCGATAGTTATATGCACAAGTTTTCTATTGAGTTTCTGCTCGAAGACCCCGCGCTTGGCGAGCTCCTCGAAGAAGCGGAGGAGGGCGAGGGCGACGCCTGCGGTGACGGCCGCGGACCCGAGGTCGTGGGCCAGGCCGCTTGCCTCGGGCGGGATCGCCGCAGCCATCGTCCCCTTCCTCCGGCTCCCGTCGGCGACGAGGCGGCGGGGCCGGGGCAGGTCGAAGGAGCAGGAGGCGGCGGCGGCGGCGGCGGGCGGCGAGAGGGGCGGCCTCGATTGCGGGCGAGAGCGCGGCGCGGATGAGGGTAGCGAGAGGAGAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.834686
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0044900.1 1 35601392 C T
Osa01LNT0044900.1 1 35602426 C T
Osa01LNT0044900.1 1 35602879 A G
Osa01LNT0044900.1 1 35602899 T A
Osa01LNT0044900.1 1 35602975 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0044900.1 osa-miR1430 Translation 5.0 14.347 1 21
Osa01LNT0044900.1 osa-miR1850.3 Translation 5.0 15.029 1 22
Osa01LNT0044900.1 osa-miR1861d Translation 4.0 19.615 1 22
Osa01LNT0044900.1 osa-miR1861h Translation 4.0 19.615 1 22
Osa01LNT0044900.1 osa-miR1861j Translation 4.0 19.615 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0044900.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0044900.1 1 nan Resistance or Tolerance Drought tolerance RG690 RG810
Osa01LNT0044900.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0044900.1 1 sf1.1 Physiological trait Sterility RM212 RM315
Osa01LNT0044900.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0044900.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0044900.1 1 nan Resistance or Tolerance Insect resistance RM543 RM472
Osa01LNT0044900.1 1 dth1.1 Physiological trait Flowering RG541 RG109
Osa01LNT0044900.1 1 ng1 Morphological trait Panicle/flower RG374 RG394
Osa01LNT0044900.1 1 sf1 Physiological trait Source activity RG374 RG394
Osa01LNT0044900.1 1 ng1 Morphological trait Seed RG374 RG394
Osa01LNT0044900.1 1 sf1 Morphological trait Seed RG374 RG394
Osa01LNT0044900.1 1 nan Physiological trait Source activity RG374 RG690
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus