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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa01LNT0045500.1

CTTTTTTTACCGCGTCGATGGAGTCAGATTCTTTTCAGCTTTTTCCTTTTCTTTTATCGGACAAATTTTTTTTTTGCCCATTTTTTTTCTCCTGTTTTTTTCGGATCGGACTATTTTTTTCTTTTTTCGCCCGGTCGATTTTTTTACCACGATATATATAATTCCTTTTTCTTTGGAATAGGACAGTTTTCTTTTTATTTTTTTTAAACTCTTTTTACCGCGTCGATGTAGTCGGATTCGTTTCGATTTTTTTCCTTTTTTTGCTTTCTTTTTTGTCGGACAGATTTGTTTTTTTTCCACCCGGTTTTTTTCCGCCCAGGTTTTTTTATCGGACTTTTCTTTTTTTTTTTTTTTTGCTCCACGATACATATAATTCATTTTTCTTTGGAATAGGACAGTTTTCTTTTTATTTTTTTAAACTCTTTTTACCGCGTCGATGTAGTCGGATTCGTTTCGGTATTTTTTCCTTTTTTTTCCTTTTTTTTGTCGGACATATTTGTTTTTTTTCCGCCCGGTTTTTTTTCGCCAGGTTTTTTTATCGGACTTTTCTTTTTTTTTCGCTCGGTTTTTTTCTCCCGTTTTTTGACGGACGACAGAAGCACCTAGAGAAGTGTTTTTTTTCTTTTCTCCAATCCAATACAGATCGGATCTCTTCCAGGGAAATCAGATTTTTTTTCTCCAGGGAATCGGACTCTTTTTTTTTCGCTTTTTTTATTCATTAAACGGTTTGTCTCTCGGACTTTTTTTTCCCTTTTTAAGGGATCGGGTGTTTTTTTGCCAGGGACGGGTGTTTTTTTCGCCCGGTTTTTTTTTCACTTTTTTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.769511
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0045500.1 osa-miR5825 Cleavage 4.5 20.638 1 24
Osa01LNT0045500.1 osa-miR166c-5p Cleavage 5.0 5.728 1 20
Osa01LNT0045500.1 osa-miR156k Cleavage 5.0 13.208 1 21
Osa01LNT0045500.1 osa-miR156k Cleavage 5.0 8.852 1 21
Osa01LNT0045500.1 osa-miR3981-5p Cleavage 5.0 9.491 1 21
Osa01LNT0045500.1 osa-miR3981-5p Cleavage 5.0 10.89 1 21
Osa01LNT0045500.1 osa-miR5492 Cleavage 4.5 9.61 1 21
Osa01LNT0045500.1 osa-miR5492 Translation 4.5 11.05 1 21
Osa01LNT0045500.1 osa-miR2275c Cleavage 5.0 9.174 1 23
Osa01LNT0045500.1 osa-miR2275c Cleavage 5.0 15.036 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0045500.1 1 nan Physiological trait Source activity RG374 RG690
Osa01LNT0045500.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0045500.1 1 nan Resistance or Tolerance Drought tolerance RG690 RG810
Osa01LNT0045500.1 1 qChll1a Morphological trait Culm/leaf C86 C813
Osa01LNT0045500.1 1 qH2O21 Others Others C86 C813
Osa01LNT0045500.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0045500.1 1 sf1.1 Physiological trait Sterility RM212 RM315
Osa01LNT0045500.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0045500.1 1 nan Resistance or Tolerance Insect resistance RM543 RM472
Osa01LNT0045500.1 1 dth1.1 Physiological trait Flowering RG541 RG109
Osa01LNT0045500.1 1 ng1 Morphological trait Panicle/flower RG374 RG394
Osa01LNT0045500.1 1 sf1 Physiological trait Source activity RG374 RG394
Osa01LNT0045500.1 1 ng1 Morphological trait Seed RG374 RG394
Osa01LNT0045500.1 1 sf1 Morphological trait Seed RG374 RG394
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus