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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa01LNT0049400.1

GCTCTGCTATTTTTAAGGAACCGATTTTAACAGCCACATCATCACCATCCTCATTATCTTGTTCTGATGTTGAATCATCATCTGAGCTCTCTTCTTCAGCATTTTGGTCAATGTACTGTAATCAGTTGAACAAAGAAGATAATGACCAAAAAACTGATACATGATTCCACATAGAAGCATATCCAAAGGGTTTCCAAGGTTGTTTCTAAAAATTTTAGCTTTCATAATGTTTGACTCATATTATCACATTAGGTTCTCAATTGTCACAAGCTTGATGTTGAATTTGTGTACCCACATCAAAACTAACAAAATGACGAGGGAAAAGGAGATGTGACCACAAAACTGAGGCAGAGCATTAGTTGGTCCTTACTGGTTGAAACCAACATTTTAACATGAGCCCAGTACAATTACTACCCATGATAATCGCATTTGTGGCTTTACTTTGAACTCTGAAATATAAATATGCACCAACAAGAGGTTCATATAAACTAAAAAATCTGACCTACCTTGTCCATCTCAACTTGCTCTTTTCGGGTGAAACCACTGGCAGCTAGCTCCTTGTCCAATGAACCAGCAGCCTTTTGTATAGACAGAAAGGATGGCCTGCTATTCTCATCATCATCAATGTCTGACCCATCCTGTTCCAGCATTAAATAGACAATAACCTCTTCCTAAAGAATTTGTAGATGCATTCAATATCTC

Coding Potentia
Explanation CPC Score
noncoding -1.00643
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0049400.1 osa-miR1428a-3p Cleavage 5.0 8.31 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0049400.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0049400.1 1 qCTs-1-c Resistance or Tolerance Cold tolerance RM315 RM472
Osa01LNT0049400.1 1 nan Resistance or Tolerance Insect resistance RM543 RM472
Osa01LNT0049400.1 1 nan Physiological trait Eating quality RM8084 RM6827
Osa01LNT0049400.1 1 dth1.1 Physiological trait Flowering RG541 RG109
Osa01LNT0049400.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0049400.1 1 qH2O21 Others Others C86 C813
Osa01LNT0049400.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0049400.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0049400.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0049400.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0049400.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0049400.1 1 nan Resistance or Tolerance Drought tolerance RZ730 RZ801
Osa01LNT0049400.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0049400.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0049400.1 1 fll1 Morphological trait Culm/leaf RZ730 RZ801
Osa01LNT0049400.1 1 ph1 Morphological trait Dwarf RZ730 RZ801
Osa01LNT0049400.1 1 sd1 Resistance or Tolerance Drought tolerance RZ730 RZ801
Osa01LNT0049400.1 1 nan Morphological trait Seed RZ730 RZ801
Osa01LNT0049400.1 1 tn1-4 Morphological trait Culm/leaf RZ730 RZ801
Osa01LNT0049400.1 1 nan Morphological trait Root RZ730 RZ801
Osa01LNT0049400.1 1 qPHT-1 Morphological trait Dwarf RZ730 RZ801
Osa01LNT0049400.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0049400.1 1 Fh1-2 Morphological trait Dwarf RZ730 RZ801
Osa01LNT0049400.1 1 nan Resistance or Tolerance Drought tolerance RZ730 RG810
Osa01LNT0049400.1 1 nan Resistance or Tolerance Drought tolerance RG690 RG810
Osa01LNT0049400.1 1 nan Resistance or Tolerance Drought tolerance RG810 RZ730
Osa01LNT0049400.1 1 qNOP-1 Morphological trait Culm/leaf RZ730 RZ801
Osa01LNT0049400.1 1 qPL-1 Morphological trait Panicle/flower RZ730 RZ801
Osa01LNT0049400.1 1 yd1 Morphological trait Seed C2340 C86
Osa01LNT0049400.1 1 qSF-1 Physiological trait Source activity RZ730 RZ538
Osa01LNT0049400.1 1 yd1b Morphological trait Seed C547 C2340
Osa01LNT0049400.1 1 pl1.1 Morphological trait Panicle/flower RZ730 RZ801
Osa01LNT0049400.1 1 qNSB1-1 Morphological trait Panicle/flower C86 C2340
Osa01LNT0049400.1 1 qSSBp1-1 Morphological trait Panicle/flower C86 C2340
Osa01LNT0049400.1 1 qChll1a Morphological trait Culm/leaf C86 C813
Osa01LNT0049400.1 1 sd-1 Morphological trait Dwarf RZ730 RG810
Osa01LNT0049400.1 1 qPHT1-1 Morphological trait Dwarf RZ730 RG810
Osa01LNT0049400.1 1 qLVBTS1-1 Morphological trait Panicle/flower C2340 C86
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus