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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0003600.2

CCAGAAACCGCGGTGGGCCGCAAATTCCATTTTATGCAGTTCGGAGTACAACCAACAGATGGCATGGTCTATCAACTTATGAAAGGCGTCAATAACAAATAGGATACAGATCCACTCAAATCCCAACAGGTTCATAGATATGACTAAAATCTCCAACAGGTTTAAATTGATTCATAAACTTTAAGACTGATACATCCCCTAACATCTCATTTAAGGGGATGTGCTTCCTCTCATTCAAGGGGATGCGCTTCCTCTAGGCGAGGCCCGATGATTGCCATTGTCTTCATAATCCCTGGGGCTTGGGCTCCGGCCATTGGCAGCTGTACTCATGTCACGGCGCTCATGGTCAGCAGGGCTACGGCTGTCAGCTCTCATTGGGCTCCTGCTGTCCCTTGGTGCAGGACTCCTGCTGGCATTAGGGGTAGGGCTGCGGTTCCTCCCGTTGGGTGGTGAAGCACTTCTCCTAGGGCTGCGGCTATCACGAGGGCTTCCCCTAGGGCTCTGGGTGTCGCGAGGGCTCCCCTTAGGGCTGCGACTGTCACGGGGGCTCCCCCTAGGGCTGCGACTGTCACGGGGGCTTCCCCTAGGGCTCCGACTGTCACGAGGGCTCCTTGATCTCCTTTCATTACGGCTATCCCTCCTTGGAGACTGGGAGCGGCTGTAGCTCCTGCTACGGCTCCTGCTGTAGCTCCTACCACGGCTCCTCCCACGACGAGGGGATGGGGATCTTGAGTAGCTTCTTCCACGCTTGAGATTCTTAGGGCTGTTCCGGCAGTCCCTTTCTATATGGCCCCTGTCTCCACACCGATAGCATCTGTTTTTCCAGTCTCCAGCTTTGCAGTCACGGGCCCAGTGCCCATCAATCCCACAGTTAAAGCAGCGGCCAGAACCAGGTGGTGGTCCTCTGCCCATATATTCACGTGATCCTCCAGGGCCACGTGGAACCCCTTTAGCAAACTCAACAATCATGCGGCTTCCATCAAAGTCCCGACCATCCAGGTTGTACCTTGCCTCATCAGCATCCCGAGCATCACTAAATTCAACAAATGCAAACTCGTGCTTCATATCCACATATCGCACTCTGCGGAAATTGTATCGACAAAGAGTAACACCATCAAGATGCAAGTAGATAAATGTTTCACCAGTCAGAAGGAACTAAACGCCAGTCAATGTTTGCAATTTCCATTAAAACATCAAGATAATTTATCAAAAGAATTGCCAAAGTCTGCTAGAAACTTTAGAGGGACAGCCACCAATTCCACGAAGGGCACCCTCCCACCATGGACACCGAGGTTGGGAAAGCCCCCAAAACCTCCCATATCTGCCGAAAAGGTCTTCAAGGTCCCGGGTCCGGGTGCGCGAGGAAAGACGACCTACGTACAGCCTCGTGTTGCCGCCGTAACGGTCATCGTAGCGATCACGGTCATCATAGCGAGGCATCTTGAAGTGTGCTCACCGGCGAGGGTCCGACGGGAGAAGCAGCACACCGGCGACGGCGCCGCTGCTCGCGGGTGGAGATCGCCTCTGCTCGGCGGCGGCGGCGGCGGCGGCGGCCGAGGAGACGAGGAGTCGA

Coding Potentia
Explanation CPC Score
noncoding -1.10958
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0003600.2 1 2988018 A G
Osa01LNT0003600.2 1 2988611 A G
Osa01LNT0003600.2 1 2988693 A G
Osa01LNT0003600.2 1 2989229 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0003600.2 1 nan Physiological trait Source activity RG532 RG472
Osa01LNT0003600.2 1 qFLL-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0003600.2 1 qFLP-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0003600.2 1 gp1a Morphological trait Panicle/flower RM1 R753
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus