© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0051400.2
GCAACATTAATTAATGAATGTTTTCGGATCAAACCAACAGAGGTTACATGGATTCGAATTCAATGGCAAAGCCAGCATCTAGCATCGTTTGCCACAAGACTAATGTTGTAATTGTTTACAGCTAAAGCTTGGACTGGTACAGCTATTACAGCTAAAAGCCTAAAACTTCTGAGGTGTTATGTACTGCAGTAGTAGGAAATCCTAGTACATGCTTGTTACAATGAAATTTTATACTTCAAAACGTGAGCCTTCACTAGAGTGAAGGGGCACTATGGATAGCTCATAGCTTGTACAACTGGCGGACCAACTCCAGGGCCTTATGGTCCTCTGCACAAAGGGCAATAATTTAGTCAAATTCCAAGGGAACCATATGAAGCTGCAGTTCCTTATGCTGTGACCTGTGAACCTGTGAGAAGTCCATAGCCACCAAGTACTATCAGCTTCTGAGTTAGCTCCATTGCGACGTTCTACATTATGAATGCTGTTCATGTTTAAAGCTCTAGTCAAAGGGCATCTTTTGTCTTTTGTTCATCTACTGTTTCTTGGACAATGCGAGAACTTTTGCCAAGTTTGATTTGGCAGCATCAAGCAGCGGATCAGATTGCAGAGACTTCTCAAAACAGCTAATAGCTTCCTCATAACGGCCCTCTGCAATAGATACAAGCCCCAGGTTGTTGTTGGCTGGGGCATGTCCAGGACATAGTTCCAACGACCGCAGTAGCATCCTTCTTGCAAGTTCATACCTCCCATGCTGTCGGTAAAGAATTCCAAGATTGGAGAGGATTGCATACGACTGCTGGCTTGAAGACAGGATGAGTGCTCGTTTATATACAGTCTCACAGGATGAATCGTCTGATAGTTGCAATGCAATACCAAGATTTGACCACACATAGCTGCAATCTGGCGAACGAGCTACAGCAGCTTTAAGGAAATTTACCGATCGGCTAAACTGAGTGGTGCAAATATTGTACAAACCAAGTTGATGCCATTGAACAGCATCATCTGGGTCCTCTTGGATAGCCTGTTTTAGTGTATAAAGAGCTCGCTCTTCTACATCACTCAGATTAATTTGTTCAGTATCATAAGCAGCAGCGATTTCATGCTGTGCCCTATGAGCCATTGCCAACCCTGCCCATGCAATTGGGGCATCAACTGCTGAAGGGTCTCCTTCTTTTAGAACTGTTGCCATTTCATTTGAAGCCCAAAGAAGTTGATCATCAGAACACTGTGATCTGACAGCATCTCTGATTCGGTGAACTGCAATAGCATACCGAGCGGGCATATGACTGGGTTCATGCTTTGCTGCCTGTTCCAAGCATCTCTTTGAATTTCTGTGTTCACCAGCCATGTAATATGCATTTGCAAGATTAACCCATACTGATGCAGCTTTAGGATCAGCCTTCACTGCTGCAAGTAAGCACTCTTTTGCAACAGCTAAGCCTTCTTTCTGATGCAGACAAGAGCCTGCACTAACATTACCACCTGACCCTGATTTGTAGTGAAATATTAGATATAAGCAAATTAAGAAGTATTCATCAATAAACCCTTGTAATGATTACCCTTGTTTTGGAGTTTTATATTGGTAAGTAAACAAGTAATGTTGTTAGCAAGTCCAATAGTGAAATCGATTTGGCTATAGAATCAGGACACCGGGATAACCGTGTGGACTAGATGTTTGCACAGTATGCCCTTCATGACTCCCAATTGATTTATGGGTATCACAGCATATCTCCAACAGTTTCACACAGTTCAAACTTTGCTCAGCTAAATAATACTGAGAGCGGCATGATTCTAAAATGGCAATGTGACTAGTCAGCATGTATACCATGATAAGAAAAGCATAGAGAGCATGACAATCAAGTTGCTGGAATACCTGCAGCAAAAGATCCATATTTACAGAGAAGGAGAGCTGCATAGTTCACCAGAGCAGCTGGGTGGTTTTGATCTTTTATAACAAGTTCTTGAAAGCATTTTGTGGCCAGTTCTAGATTCCCACTTTGAATGTAGGCAACACCAAGATTCGCAAGAGAGTCCAAGTAATCTGGAGCAACAACCGTCAGAGAAGATAAAACTGAGATAGCACTCTGAAGCTGACCACTACGAAGAAGAACCAAACCAAGGATATTCCAAACAGCTGCCTGTCTGGGGTCAGATTCAACTGAACTCTTCATTTTAACAAGGATTTCATCTAGTTCACCAGATTCAAGCTCTTCATCAAAAGTGTCACCCATACTTGTTTGCAAAATGCACTGAGCATGGTGTATCCTCACTGATGAGAGCAAATCAGGCCTTCGAACTTCTTCTTCATCTTGTAACAATATCTCAGATGACTTCTCATATGCCGCTATTGCCTTCTGTGGCTGACCAAGCCTTTGGTACATCAAACCCAACATAAAATGTGCATGGGCATTTTTAGGCATCTTCCGTGCCACATGTACCAAAGCAGCTTTCAGGTTGCTAACTTTCTCTTCGCGTGCAACAGAAGCCCCTTGACAATGTTGATCAGCATCTTCGCATTCAACAGTATCAGGTTCCTTCGTTGTGATCACGCTTTTTGCCAAACTACCCTCATCATTGCTACTCCTAGTGGAGGAATCGATGGCGACCACCGTCGCCGCGGTGACGGCGGCGGTGGCGGGGTTTACGTTGGGGTTGGGAGTTGGTGGTTGGTCCTCGCCGTCGCTCTCCGGCGGGTCGACGTTGAGGTCGGCTAGCATGACCGGCCTCGGCTGCTACTGCGGCGGCGGCGGCGGCGGGGAGACGGGGGACGGCGAGGCGGAGACGCCGGAATCTCTCGCTCTCCAGCTCTCCCTCAGTCCTCTCTCTCCGTCCTTTCGCGTCGCGTGATTCGCTGTTTTCTGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0051400.2 | 1 | 39469447 | T | C |
| Osa01LNT0051400.2 | 1 | 39473303 | A | G |
| Osa01LNT0051400.2 | 1 | 39467664 | T | C |
| Osa01LNT0051400.2 | 1 | 39467975 | A | C |
| Osa01LNT0051400.2 | 1 | 39469211 | T | G |
| Osa01LNT0051400.2 | 1 | 39469341 | G | A |
| Osa01LNT0051400.2 | 1 | 39469470 | G | A |
| Osa01LNT0051400.2 | 1 | 39469588 | A | G |
| Osa01LNT0051400.2 | 1 | 39469782 | C | T |
| Osa01LNT0051400.2 | 1 | 39469832 | T | A |
| Osa01LNT0051400.2 | 1 | 39470576 | T | A |
| Osa01LNT0051400.2 | 1 | 39470582 | A | G |
| Osa01LNT0051400.2 | 1 | 39470822 | G | A |
| Osa01LNT0051400.2 | 1 | 39471587 | A | G |
| Osa01LNT0051400.2 | 1 | 39471861 | A | C |
| Osa01LNT0051400.2 | 1 | 39472059 | A | G |
| Osa01LNT0051400.2 | 1 | 39471836 | T | A |
| Osa01LNT0051400.2 | 1 | 39473029 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0051400.2 | osa-miR5528 | Translation | 4.0 | 17.481 | 1 | 21 |
| Osa01LNT0051400.2 | osa-miR5528 | Cleavage | 5.0 | 20.659 | 1 | 21 |
| Osa01LNT0051400.2 | osa-miR399h | Translation | 4.5 | 21.188 | 1 | 21 |
| Osa01LNT0051400.2 | osa-miR167d-3p | Cleavage | 5.0 | 19.941 | 1 | 22 |
| Osa01LNT0051400.2 | osa-miR166g-5p | Cleavage | 3.5 | 17.777 | 1 | 21 |
| Osa01LNT0051400.2 | osa-miR444a-3p.2 | Translation | 4.5 | 20.095 | 1 | 21 |
| Osa01LNT0051400.2 | osa-miR444d.3 | Cleavage | 5.0 | 14.049 | 1 | 21 |
| Osa01LNT0051400.2 | osa-miR444d.2 | Translation | 4.5 | 20.095 | 1 | 21 |
| Osa01LNT0051400.2 | osa-miR444e | Translation | 4.5 | 20.095 | 1 | 21 |
| Osa01LNT0051400.2 | osa-miR444f | Translation | 4.5 | 20.095 | 1 | 21 |
| Osa01LNT0051400.2 | osa-miR1846c-3p | Translation | 5.0 | 19.243 | 1 | 21 |
| Osa01LNT0051400.2 | osa-miR2863a | Cleavage | 4.5 | 11.899 | 1 | 21 |
| Osa01LNT0051400.2 | osa-miR2876-5p | Cleavage | 5.0 | 14.343 | 1 | 21 |
| Osa01LNT0051400.2 | osa-miR2878-5p | Cleavage | 5.0 | 17.422 | 1 | 24 |
| Osa01LNT0051400.2 | osa-miR5513 | Cleavage | 4.5 | 16.533 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0051400.2 | 1 | tn1-4 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | fll1 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | ph1 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | sd1 | Resistance or Tolerance | Drought tolerance | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | nan | Morphological trait | Root | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | qIN2-1 | Morphological trait | Dwarf | nan | nan |
| Osa01LNT0051400.2 | 1 | Fh1-2 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ730 | RG810 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Drought tolerance | RG690 | RG810 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Drought tolerance | RG810 | RZ730 |
| Osa01LNT0051400.2 | 1 | qNOP-1 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | qPHT-1 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | qPL-1 | Morphological trait | Panicle/flower | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Drought tolerance | C86 | RZ14 |
| Osa01LNT0051400.2 | 1 | qSF-1 | Physiological trait | Source activity | RZ730 | RZ538 |
| Osa01LNT0051400.2 | 1 | yd1 | Morphological trait | Seed | C2340 | C86 |
| Osa01LNT0051400.2 | 1 | yd1b | Morphological trait | Seed | C547 | C2340 |
| Osa01LNT0051400.2 | 1 | qNSB1-1 | Morphological trait | Panicle/flower | C86 | C2340 |
| Osa01LNT0051400.2 | 1 | qPH1-1 | Morphological trait | Shoot/Seedling | C86 | RG236 |
| Osa01LNT0051400.2 | 1 | qSSBp1-1 | Morphological trait | Panicle/flower | C86 | C2340 |
| Osa01LNT0051400.2 | 1 | pl1.1 | Morphological trait | Panicle/flower | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | qChll1a | Morphological trait | Culm/leaf | C86 | C813 |
| Osa01LNT0051400.2 | 1 | qPHT1-1 | Morphological trait | Dwarf | RZ730 | RG810 |
| Osa01LNT0051400.2 | 1 | sd-1 | Morphological trait | Dwarf | RZ730 | RG810 |
| Osa01LNT0051400.2 | 1 | qRIE 1 | Resistance or Tolerance | Submergency tolerance | C86 | G54 |
| Osa01LNT0051400.2 | 1 | qLVBTS1-1 | Morphological trait | Panicle/flower | C2340 | C86 |
| Osa01LNT0051400.2 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0051400.2 | 1 | rrw1b | Resistance or Tolerance | Other soil stress tolerance | C86 | RG236 |
| Osa01LNT0051400.2 | 1 | qCTs-1-c | Resistance or Tolerance | Cold tolerance | RM315 | RM472 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Insect resistance | RM543 | RM472 |
| Osa01LNT0051400.2 | 1 | nan | Physiological trait | Eating quality | RM8084 | RM6827 |
| Osa01LNT0051400.2 | 1 | qH2O21 | Others | Others | C86 | C813 |
| Osa01LNT0051400.2 | 1 | dth1.1 | Physiological trait | Flowering | RG541 | RG109 |
| Osa01LNT0051400.2 | 1 | qRNd1 | Resistance or Tolerance | Other soil stress tolerance | RG236 | C86 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | nan | Morphological trait | Seed | RZ730 | RZ801 |
| Osa01LNT0051400.2 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)