© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0052300.1
GTGCGTCATCATCTTTGAGGTGATCTAATGTCTAATTAGATATGATACTGATGTAAGATGCATACAGCATGACTGCATCTACCATGTTTGGCGTAAATTTTGCTTGCTGCAGAGTCCAACTTGTGTAAGATGGTAGCTTATGCTTCTCAGTTTTCTCTCTTTCTGTAGCATCTGTAAATCCTGTTCCTCAATGACACCTATAGCTCTGTACAAACTAAAAAAGAGAAATTCGGAGGAAGATATGTCCCTCCAAACTTTTTAAAGAAAAACTTGTGAACATTTTTTAAGAAAAAAATGTAAATATGTTAGGAATTAAACACAGGACCTTAAAATTAAAACCACACATCCATTACCACTATCAAGTGCATCCAGTTCAGTACAAACTGATCGTGTCGTCAGCTAAACCCTAGCGTGAGCTAAGGTCGATGAAGCCACTCTAACCAAAAGGCTCCTCCTGGAACGGTACCAGATAAATGTTGAAGGATTTTTGTGGAAAAAACTTTGGGTGTTCTAAAAGAGCTAATTAAGACTCAAATTTGACATTAGCAAATCACCGTAGCCGCTCTATTATCGTCTGAAAATTCATTGCTTATGATTTTATCGAATCCCACTAATCCGTAATTCGCCCATAGCTAAGGTTAATAACCGCGACGATGAAACAATTGCCCTCAGTTTTGCAGACTTGGCGGTATATCATCATTGACGGATGCGTACCTTGGGAAGAGAGTAATGAAGCGGGCAAAGAATCGATCGCTCGTTTCCTGCCTGATTTTGGCGGTATATCATCATTGACGGTATATGCTGGCATTTTGGACCAATCATCGGACCAGCCACGTCATCAACCACACCAAACTCACCAAACTGCGCGTATGGTTCTGTAGCCGCCGCCGTTAACGATGTGATTCGATGGTATTTACCTGGCTTATGGTCTGGTGTGTCCGTTTATCCGAGCACCAGAAACAGATTACCTTAAGATTAGCTACTTGGGCACTTCTGGTAGTGAAGTCATCGCACTGGCAGGTGCTAAATGACTGCATGGTGCCACTCTGTCCGGTTCATTTTCCCCCTGAAACACATTTCAGGAGATCCTGGCGGAATGGGTGGAGCTCAAACAGCAGTAGCCTTGTGCACTGTTCAACGTTTCCATGGACCGTGCCAATATATCTTACCCGTGCCTTCCAACTTATCCGTGAATGACGAACACCGGACAGGGCGGGTACTGAAGTTTGAAACTGTCGAGACCAACAATTTCAGAGAAGAGAACGACAACCTGCAAAAACAGTTAAGCCTACAAGAGAACCAAGTTTAAGGGCGGATGCAGCAGAGCCACGGGACATCATCAAAAGTTCAGTCACAGCAATTCCTGCAGTAAGGTGCGCCCAGGCATAGCGTTCCAGCTTGCGCATGAAATCTGCATAGATCTCCAAATGTAATTAGTACTTGTAAGGAAGAAAGCAACAAACCATCCACGACCTGAACTGCCACCAATCTTCAGGTCCACTTATCACGATGACAGACCAGACCAACAACCTGATCGCGCATACATGTTGCAGAAGAAAAAAAAAAGTATATATCTATTTTGCATGCCTTTTTTTGACTGTCGATCAATTCAAGAAATGTCCAACAATCCACTCCTAATATTGATAAGAAAGAATCAACCCTCTGATTTACTTGTCTAATGTTCACTATGAAAAGAATACTCTGCAAAACTCAGAACGGGGTGACAAGAACTGGAAGAAATATGATCCCCTAGGGAGTCTTAACACTTGACGCAACAGTTTTCTATAGAAAGTCCTACAAGTATAGTTTCTCCCCCCAAGATTTCTACTAGTTTCTCCCCCAAGATTTGGACGCGGACAACTCTTTCTCAGTTTTTGTGCGTTAAGAAGGTGAAAAGGCTTATGTTACCTCTCTCTCTCGTAATATTTACACAACCACACGACCCGCTGATTCTTATCTCTCAAAATGGAAATTGTGCATCATCTTCTAGCACCTTAAAATGTTGAGGATGCCTACCAGAGCAATGCAGGTTCCACATATGTAAATATGCCCTCTCCAGATTCTTTACCCATCGAGCTGTATCAAACAAAGGACAGGTCATCCTAACAGCCTTGAGCTTGTTGGTAAGAGCTTCGAGTTTCAATGGATTTTCTGCTAGAGAGACTGCCCTTTCTTCATATTCTTCCAGGCTATTGACTACCATCTCTTCCCCAATTCCAGTAGCTAGACACAGTGAACCTGCAACCCTAGTTGCCATTTTCTCTAGTGGAAGAGTGATCATTGGGAGACCAGCCCATAATATATCTGTACCAGTGGTGTGGCCATTGCACAACGGGGTGTCAAGAAATAGATCTGCTAGGGCACTGCGTCTGATGTGCTCATTTTTTGCAGCAACATCTGTAAATATGATTTGATCTGCTCTTACTCCCTTTGAGATTGCATATGCGCGCAATCTCATCTCTCCAGCTGCTGGAAATCTCAATAGCCACAATGCACTATTTGGTACACGCTTCAGAATATTGCACCAGGTGTTGAATATGTCTGGGTCCATCTTGTAGAGTTGATTGAAGCATGCAAAAATAAATTTGTCCTCTGGCAGACCATAGTCAGCTCGCTTGTGTGGGCATACAGGACCAAGAACATCTCGATTTTTCTGCTTATAGTCATTCACAAAGTAACAGTGGGGAAGATGGACAAGCTTTTCTGAGTATATATGTGAAAATTTCAGTGGAGAAACAAACTCATCAGTAACCAAATAATCAATGTAATCTGCACCAGTGGTTCCAGGAAATCCCATGTAAGAAACCTGGATTGGGGCTGGTTGTAAAGCGAATATTTCATTCCGTGCACCCTTAGTATAGCCATTAAGATTAATAAGAATTTGTATCTTATCCTCATTGATAACTTTAGCAATCATATCAGATGACATTGATGACACATCAATGAAGTGCTCAGCTTCAGATCGAATACGCTGCCTCCATTCTGTACCATCATCTTGGCTCAGGGCATAACAGAAAACCTCGATAGTGTCTTGATTGTGCATTCCAAATATAGAACCCATCAGATGAGACAGGGGATGATTGCCAAAATCACTACTCACATACCCTATTCTAAGTCTTGAAGTTCTGCCATCATTGCTGATTGGAACAGGATAGGAGTGTGTGAATGTAGGAAGCCCAAAACGTGATGCAACCAAAGAGTAATGAGCTGCATATGTTCGACTGATTTCCAGTGCAAGAGTTGAATCAATTGGATATGCTATAGCATGGAATGGTTGTACACTTGGGAGAGAGGACATCTTTATTTGCTGCCTGATGATTCCCTCCACCTCCACGAATTTCTCTGCTCGATCATCCCAATCACATACACACTGTAGAGTGTGCAGGAGATTGCAAGTAGCTTCAGGAAAATCTTGACGTAATTGTAGGGCCTGCTTGTAACTGATAATTGATGCCTCCAGCAAGCCTGTGTCTTTGTAAGCAGCCGCCAAATTTGCATGAGCTTCAGCCATAGTTGGTCTAATTGTAACAGCATGAAAATAGTCTTGAATGGCTTCAGTGATCCTGCCTGCTTCTTTAAATGTGTTGCCTCTATTGACAAGACAGTCAGCAGCCATTGGATCAATGCGGAGTACTTCATTGAAACATGTAATGGCGTGATTACAGTTTCCCTGCTGTTTGTAAATCATTGCCAAGTTGTTGTAAGGTGCAGATAATCCAGTTGTAACTGTCAGTGTTGCCATGTACAGTGAAGCTGCTATGTCCATCATGTTCCTTTCCATATATACATTCCCAAGGTTTGTCAAAGCCTGAGGGTGAGAAGGCTGAAGAGCAAGGCATGTCTGGTAGCAACTAATAGCCTCTTCATTTCTCCCAGCATCTTTTAGAGCATTTCCCAGATTATTATATGCTTCAACATAAGATGAATTGCAATGGATGGCTTGTCTATAACTTAGAATAGCAAGATCCAGTTGCCCTTGTTCATGGTAGGCATTACCAAGATTCCCATAAGCTACTGCATTTTCTGGCTTTGCCCTAGCAGCATTCTGGAAGCATACAATTGCATCCTGACGCATTCCAGTAACCTTGTAAAGATTTCCCAAGTTCAGGTGTGCATCGTAAAATGCTGGATTGCATTTGATTGCTTCCTTGTAGTAGAGAGCTGCTTTATTGAAATCTCCCCATTGCATGAGAAGTCCAGCAATATTATTCCATGCATTTGCAAAAGTAGGCTTTATGTTTAGAGCATCCAAGTAGTGACTGTATGCTTCTCTGTACAATCCTTGTGCCTTCAAAACATCACCAAGGTTACAATATGCATCAGCCAGATGAGGATTTAGTGCAAGGGCTTGATGGCAGCACTCAGCTGCCTGACTGAGATTTCCTTTTCGAGTATAAGCATTAGCTAAGTTTGTCCACGCATCAGCAAAGGTAGGCCGGAGCTGTACTGCATGCACATAAAACTGAATGGCATTATCAACATCGCCTTTCTCCCTCCAGGCATTCGCAATGCTGTTGAAGCACTCTGGGCAATTCGGCTGGATTGCAACAGCCTCCTCGTTCTTCGCGATGCACATGTCAAACTCTCGTAGCTGGTAATAGACGGCGCCGAGCAGCAGGAGGTTCTCCAAGAGCCTCGGGTTCGCCCTGTACACGGCATTGCAGTGCTCCAGCGCCGCTTTGTAATCCCCTGCTCTGTAACTCTGCCGCGCGATCTCGAGGCGCGCGCCCTCGTCAACTTCGAGGGGGTCGAGCCGGAGGGATTCGACCACCGTGCGCAGCTGCTGCTGCTGGCGCGGGGTGAGAGGGCGATGGTGGCGCACCGCGCCGTGCTCCTCCACGGCGGCGGCGCCACCGCCTCCGCCTCCGCAGCGCACCGAGAGCATCGCCGGAAAGCTTCTCCGACGATCGGAGAACCAAAAGTAAAAAAAAATAAAAACCTAACCCGCGCGACGGCGCCGCGCGGCCTCGAGCTTTCGCGTACGAGTCGGGGAGGGGGTTGGACTCTCTCGGGCGATATCGCCTTTTCGCCTTCTTTTTTTTTTTCCTTTTTTTTTCGGATGCGTCGTCGCGTTCGTGGGGATTGGGAAAGCGTGTGACGCGGTCAGCGTGCG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0052300.1 | 1 | 39883862 | A | G |
| Osa01LNT0052300.1 | 1 | 39879971 | G | A |
| Osa01LNT0052300.1 | 1 | 39880235 | T | G |
| Osa01LNT0052300.1 | 1 | 39881065 | G | A |
| Osa01LNT0052300.1 | 1 | 39881566 | C | A |
| Osa01LNT0052300.1 | 1 | 39882290 | T | A |
| Osa01LNT0052300.1 | 1 | 39882298 | T | C |
| Osa01LNT0052300.1 | 1 | 39882493 | G | C |
| Osa01LNT0052300.1 | 1 | 39883260 | A | T |
| Osa01LNT0052300.1 | 1 | 39884206 | T | G |
| Osa01LNT0052300.1 | 1 | 39884731 | T | C |
| Osa01LNT0052300.1 | 1 | 39885057 | A | T |
| Osa01LNT0052300.1 | 1 | 39885266 | A | G |
| Osa01LNT0052300.1 | 1 | 39885274 | A | G |
| Osa01LNT0052300.1 | 1 | 39886477 | A | T |
| Osa01LNT0052300.1 | 1 | 39886560 | A | G |
| Osa01LNT0052300.1 | 1 | 39887207 | A | G |
| Osa01LNT0052300.1 | 1 | 39887527 | T | C |
| Osa01LNT0052300.1 | 1 | 39888151 | A | T |
| Osa01LNT0052300.1 | 1 | 39889228 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0052300.1 | osa-miR5516b | Translation | 5.0 | 20.343 | 1 | 21 |
| Osa01LNT0052300.1 | osa-miR1861o | Translation | 3.5 | 11.898 | 1 | 22 |
| Osa01LNT0052300.1 | osa-miR167d-3p | Cleavage | 4.5 | 12.408 | 1 | 22 |
| Osa01LNT0052300.1 | osa-miR171c-5p | Cleavage | 5.0 | 16.978 | 1 | 21 |
| Osa01LNT0052300.1 | osa-miR171f-5p | Translation | 4.0 | 17.98 | 1 | 21 |
| Osa01LNT0052300.1 | osa-miR171f-5p | Cleavage | 4.5 | 17.525 | 1 | 21 |
| Osa01LNT0052300.1 | osa-miR172b | Translation | 4.0 | 14.379 | 1 | 21 |
| Osa01LNT0052300.1 | osa-miR528-5p | Cleavage | 5.0 | 9.55 | 1 | 21 |
| Osa01LNT0052300.1 | osa-miR1426 | Translation | 4.0 | 14.379 | 1 | 21 |
| Osa01LNT0052300.1 | osa-miR1432-3p | Translation | 4.5 | 21.515 | 1 | 21 |
| Osa01LNT0052300.1 | osa-miR1861a | Translation | 3.5 | 11.898 | 1 | 22 |
| Osa01LNT0052300.1 | osa-miR1861b | Translation | 4.0 | 11.898 | 1 | 22 |
| Osa01LNT0052300.1 | osa-miR1861f | Translation | 4.0 | 11.898 | 1 | 22 |
| Osa01LNT0052300.1 | osa-miR1861i | Translation | 4.0 | 11.898 | 1 | 22 |
| Osa01LNT0052300.1 | osa-miR1861l | Translation | 4.0 | 11.898 | 1 | 22 |
| Osa01LNT0052300.1 | osa-miR1865-3p | Translation | 5.0 | 15.343 | 1 | 24 |
| Osa01LNT0052300.1 | osa-miR1876 | Cleavage | 4.5 | 15.548 | 1 | 24 |
| Osa01LNT0052300.1 | osa-miR2870 | Cleavage | 4.5 | 14.044 | 1 | 21 |
| Osa01LNT0052300.1 | osa-miR2876-3p | Translation | 4.5 | 14.147 | 1 | 21 |
| Osa01LNT0052300.1 | osa-miR1863c | Cleavage | 4.5 | 15.091 | 1 | 24 |
| Osa01LNT0052300.1 | osa-miR5081 | Cleavage | 5.0 | 10.886 | 1 | 22 |
| Osa01LNT0052300.1 | osa-miR5504 | Translation | 4.5 | 22.97 | 1 | 21 |
| Osa01LNT0052300.1 | osa-miR5516a | Translation | 5.0 | 20.343 | 1 | 21 |
| Osa01LNT0052300.1 | osa-miR5519 | Translation | 3.5 | 22.592 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0052300.1 | 1 | qRNd1 | Resistance or Tolerance | Other soil stress tolerance | RG236 | C86 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | nan | Morphological trait | Seed | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | tn1-4 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | fll1 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | ph1 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | sd1 | Resistance or Tolerance | Drought tolerance | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | nan | Morphological trait | Root | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | Fh1-2 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ730 | RG810 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RG690 | RG810 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RG810 | RZ730 |
| Osa01LNT0052300.1 | 1 | qNOP-1 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | qPHT-1 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | qPL-1 | Morphological trait | Panicle/flower | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | C86 | RZ14 |
| Osa01LNT0052300.1 | 1 | yd1b | Morphological trait | Seed | C547 | C2340 |
| Osa01LNT0052300.1 | 1 | qPH1-1 | Morphological trait | Shoot/Seedling | C86 | RG236 |
| Osa01LNT0052300.1 | 1 | pl1.1 | Morphological trait | Panicle/flower | RZ730 | RZ801 |
| Osa01LNT0052300.1 | 1 | qPHT1-1 | Morphological trait | Dwarf | RZ730 | RG810 |
| Osa01LNT0052300.1 | 1 | sd-1 | Morphological trait | Dwarf | RZ730 | RG810 |
| Osa01LNT0052300.1 | 1 | qRIE 1 | Resistance or Tolerance | Submergency tolerance | C86 | G54 |
| Osa01LNT0052300.1 | 1 | FSM | Morphological trait | Shoot/Seedling | nan | nan |
| Osa01LNT0052300.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0052300.1 | 1 | rrw1b | Resistance or Tolerance | Other soil stress tolerance | C86 | RG236 |
| Osa01LNT0052300.1 | 1 | nan | Physiological trait | Eating quality | RM8084 | RM6827 |
| Osa01LNT0052300.1 | 1 | dth1.1 | Physiological trait | Flowering | RG541 | RG109 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
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