© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0052800.1
GCGAAAACTAACAGGAACACCGCTCACGTACAAAAATAGGATCATGCACACATTGTTAACTGTAGTATGTACAACCGTGCAAGCCTGTTGTCCCCTAGCATTATTCCTACACAGTGCAAAAATTGCAATCAAAATTCTTCCTACAACGAACATATCTGCGGTTAGTAGAGTTACAAAATAGCTGGACGGCGAACAGCTCATCCAAGTTTACATCACAAGATCAAAGGTTAGGCCATTAAGTCTGTACTCTGCATTCCAAATTGTTCAAACAACAGAATACATAAGAGTTAAACAAATGTCATGTATCCACAACTTCTGTTCGTGTTACGCGATAGGACCAAACTGCACCTTCAATCAAGGTATTTCTAAAAATTCTGGTGCAGCATGTACCTCTGAATGGCCTGTTAATACGATGAAATATGTGATGTTGTACATTGCTGATCATGTGCTTCTTTGTAAAGCTCAGGAGAATTCATGACTTGTTTTGCATCTAACAAAATTCCAACAATTATCCTACTTCCGGTGCTTCCTTTTAGTTTCCGTTCTTGATCGCTTTTCCTCTTCCCATTCTCTCTCATGTACTTGGTCAGCCTCTCTACGACTTGTCTTGCTCGAGTCCTTTCCATGTATTCTAGGAAGGTCATCAGCATGGGATATCCGATGCTGTGAAATTGCCCCCTTTCGTTCTCGCTCTCGTGTTTCAAACACTTGTGAGCTACTGGTTCCATGACTGGGAAGCTGTGGAGCAGAAGGTGCGTATTCCCCAGCTTCTAAACCAGACTGATCTCTCTTGATCTTTCGCCGTTTGGAAGCACTATTAGGATCACTTTCATCCTTCACAATACTACTTTTGTCCCTATCCCGGTCATCTACCTTGCTTGACGAAACATCCCTATCTTCACGCTTTCTGTCCCGAATATCTTCCTCTCTCCGGTGCTTTCCATCATCCTGCAACGACGCAGCATTGTCCTCCAAGTGCCACTTTTCTTTATCATCACGCCTAGGAGATGATCGTTGGTTATGCCTAGTACTACCACCCCTTCGATCGGTATCTTCATCTCTCCTGTTACCAACTGATTGGGGTACAAAACTTGCTGGAAGGGGTGGAGGTGGTGGCAAGCTTTGTCCTCGGAACCGTTCATCAGAAGGATGTGCACGATCTATGGATGGTTCAGCATGCTTAACTTTATTTCTCTCCTCCTTATTCCTGTCTTCTCTTCCTTTATCAGGAGCTCTATCTGTCCCTCTTTCTTGCATTCTTTCAATAGAACGCTCTCTCCTTTCCAATGATTTGTCTGTTGGTCTCTCGATGTCTTCCCCTCGACGCCTCTCAGTTCGATCTGCTTTTTCTCTAGGATCCCGGTCATATTTGTCATCAGCCTTTTCTTTTGATTTCTCTGGCCTACTTAGGATTTGTTCCTCGCTAGCACTCTTGTCATGATCCATGGGACGAAATTTATCTACCAATCGCGAGTCCAAATTTCTGTCCTTGTCAGTGTGTTCTGTGAAGTCACCATCCCGGCCTTCACTCTCTCCTTTCCTCCATTTAGTTCCTCTATCTTGTTCTTCAGTAGGAACAAACCTCTTTTGCTTCCGTGGAGCCGTATGTAAGTTACCATTGCTAGCAGCCAAAGAATTACTGGTGGTATCTTGCACACCATCAGCTGCCTGAGACAATACTTCTTTATCAACAGGAACAGAGGAGCCTTGTTGAGTAACACCTCTGTTTGTAGATTTCCCAGATTTTGTATCTTCCTTTACCATATCATGCTTAGATACCTTGCCAGCATTGTGTGCCACACGCTTTTGGGGCACCCTTGTCTCAGATTCTGCAGTAGGCTTTGAAACCTTAACTCCCTCATCAGATAGAAGTTTGGGAGGTTCATCAGAACCTCGTATAATCCCTGAAACTTTTCCTTGTGCAGAAGAAGATGGCATTTGGTTATCAGATCCATTTGCAGCCAAGGCATTTTTCTTTTGTTGAGCATCAGGCTTCATGGCAGCTTCTGACCGTTCATGCCTACCCTCAATGGATTTTGCACGAACACTCTGATCTTTTGCTGTCAAAGGATCTGCTGATTGATTTCCAGGCACAATTTTTGCTGGCCCTTGCTTAAGATCAAGGAGACCCATGCCGAACTCTTCTTCAGATAGCCATGAGCTCTTGCGGGCTGCCAAAGCAGCAGCTACACCAGTTGCCAGAACTTTCAGATCTTCCCTTTCATCCCCCTTCAGCTTAGCAACACGTTTCTCAAGATTGACTCCACTTTTGCGTATCACAGGAAAAATGCTAGATATCTTTGTGAGCACAATAAGGGCGTTTCTGATTTCCATGTATTCTTTTGATTCCATGCACTGGTTCAGCACCTTAGTTATTCGTCCACTCCACTTCCAATGAACTCGAACAAACTGGCTATAAGATACACGCTGGCTATTTGGATATCTGATGTACACAGCGAAACCTGGCTTATTTCCACATTCACGCTCATATAAAGATTCATCGCTCTTCCAACGGTAGGCCATCTTCAGTGTCTCATGAAGAAACCTTCCCAGCCTGCCAGCCTCATACTCTGTGCAGCAACAAATCATTGGCTGTAGAGTTTTGCAGATGAAAACATCGATATGATTCACCGTGTTGAAAAATGGAGTCTCGAGTGAGTGCAGTGTTTGGACAAACATAGCACAATACACAGCATCTTGCATGCTAAAAACACAGCGAGGGAATATGCAGCGCTGGAAAAATTCCATGTTGATCTTCAGAGCATCTGGACTGGAATTTAACCACTTAACCTTTTCACGACCTAGCCTTTGGAGCACTGATGCAATGTGTTGTTGGTGCTTATGTGATTCATTGTTCAATTTGTCAAGCAAATCTTGGATTCTCTCCTTGTCCTTCTTGCGTCGTGAGATTGCAATACTAGAGTTATCCGAATTATCTTCCAGTTGTTTAAGATTTTCATGCAGCTTCTTTATTTCTGCATCATAACGATCTTTGGGGAAATGAAGATCATATAGTGTTAACCCCCAGAAAGTAGCATATAAATCAGGTGATAAACCATTCCAGGTTTTTGCTGGGAAAGTGTTCCGGACTGTGCTAAGAAGATCAGACCACATGATTGACTTATGAGATGTGTCAGGATGCAATATCAGATCATCACATGATACAGACTCCCCTTCTTCATTGTCATCCAAAGGCCAATAGGTGTCACCTCCATTAGTGCTTTTGAAAAGTCTCATCACAGGTCGGTATATAAGAAAAGCAACGTCAGGCTCGATATGATACTTATTAATCAGATCTTCCAGCGGAGGTATTAGTTGAACATAAGTTGTTGGAGTTACTGCAGTTGAAAGAAACTCAACATACTGAAGTAGTATTCCATGGCACCGATCAAACTGCTCACTGACCATTTTGATATATGTGGCATCAGCATTAATTATAATCTTGGATCGATGCTGAGCAATAAGCAGTAAAAGGGGAATGGCAAGTTTAGGTTCTTCTTTTGGAAGCAAAGAATCCCTCAATTTGTTTGTAGACTTGGTCAGAACCTTAGAATTTCTTGTTGATCCAAATAGTGATGAAGCTTGAAGCCGCAATGTTTCACTCCCTGCCATAGCATCAACCTGCTCCTCAGTCATGTTCTCAGTGTATTGCACATTTGCCATTTGCTGAATGAGTTCCTCGAGTACAACAAGCTCAATGCCTGTGTCTTTCTTCAGCTGATTAACAAGGTACTGAAAAAGGCTTCTTAGCTCCACCGAATGATGCTTCTTGCACAGGTGCCCCCAGAATGATGCAAGACACTGAAGCCAATCAGATAGATTAAGACCATCATCTTTAAGTTTCTCACGGCCACCTTGAGCCAAGCGTTCAATTACAATATATTGCAAGATGTCAAACTCCAGCTGAGTCAAGTATTTAAAAGCATCGACGACTGGAGTTATCATGTCCCTATATGCTTCAACCTGTTGGATAATTGTCCGAAGTACTGTCATTGGATTTGCATGGGCAAGTTTAGCCACCATGCGGCCAAGTTGCTTCAGATTTTCCTTAGCAAGCCGCTTTAAGAGCCTTCTGGTATCCAACTTTGCAGTTTGCCTTGCAGCAAGGACAATTGGGTTTTGTTCGGTATCCTTCTCCCATTCACCATATAAGCGATAACGGGTCTCATAAGGAAGAAGAGAAAGAACTCCCCATATCTCCATATCAACAGCAGGATTTGCAGGTATAAGCTGCAATGATGGTAGCAAGCACGATCCAAGTGCTTCTTCAATTCGCGAGTCTGGAGACATTACACCTGCTGTACGGATTGACTCTTTTGCTGACAGATGGTACGCTTTAAGTACTCTGCAAACCTTCTGAAATAATTGTGTGTTACGATGAAGGTATGGTCCACAAGCAGAAAGCATTTGGAAAAACTCTTTCGGCGGATCAACCGAAAAACTTTGTGAAGAGGAAGGTGATGTGTCCATCATATAAACAGGGTTACGAGGCATCTTATAATGTGTTTGGAAAATTATATCATAGACTGAAGAAATACTCCTTTCAATAAGTCTAAATAAACTATCACAAATTTCAACATGCTCAACAGGATTTAGGCGTGCAAGACGCTCAAAGAGGAGTTGTGCATGATCCCAATCATGAACTGACAGGAAACCAAGAAGAAGTCCAAGTTTCTGGTTCTTTTCAATCTCAGGGGCTCGCTCATCAATTATATCATTTTCCATCTCCAATGCTGTGTACAAATCAATAGTTATTTCTTGCTTCTCGTCATCCATAAGGTCCTTCCCAGTGGCAGCAAGATTTATTTTGCCTATATTACTAGCCTCATCGATTTTCCTCGTGACGAAGGAGTCAAAATGCTCAAATGCCTCATCATCATTTGGAAGTAAATGAGCATAGAGGCTATCAAGGTCAATAAAACCAGATTTGACCAACAAAGCTGCTATCCGGAAAAGCCCAGGTGGAACAGTGCTATTGACATCCAATCGTTGGTAATATTGGAACTTGAACCCCAATATTTGAGCAGCATGGGACTTAGGGAAAAGAGGTATAAGCTGACAAAAGATGGTATTATCCGGATAGAGCTCAAAACATTCCAGAACAATATCAAACACACGATTTGGGTCCAGGTCAAAATGCCCAATCAATGACTTTATAATGCTCATAGTAACTGAAGAAGAATTTTGACAAGCCAAATCTGAACCAATTTGACAAAGGAGGGTTACCAATTTGGCGTAGCCCTCACTTTCCTCTCTTAAAAGGTTGAATTTAGTTTGCTGATAAAGGAGACGTGTGTTGACCCTGACCTCCTTAGCCTTCAAATCCTGCCCCTTTGACTTACTCAGTTCAACCTCCCAGAGGAACTCTTCCTCGCATCGCTCTTGAAGGAGCCTAGGCGCAATCAATGACGACTCCACAAATGATTTGGTCATTTTGACAAGACGGCTGCGATATTCACCAGAGATTGTAACATCCTGCCCTAGGTGGGCGATGATGTCGGCGAGTACTGAGCCGACCTCCCCTCGCTGCGCCTCCTCCACAAACTCCACCGAGTCCAGAGCCACCCGGCACTTCTGCGGCGGCAGGTCCCCCCGCACCACCGCCCAGCAGAGCTCGTAGAGGAAGCGCGCCATGGGGACCGGATCGGGGACGCGGAAGGCGGCGGCGGCGGCGGGCTGGCCCTTCCACTCGCGGAGGCACTCCTCCGTGACGTGCTTGTAGTC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0052800.1 | 1 | 39960845 | C | G |
| Osa01LNT0052800.1 | 1 | 39960900 | T | G |
| Osa01LNT0052800.1 | 1 | 39961115 | A | C |
| Osa01LNT0052800.1 | 1 | 39962255 | A | G |
| Osa01LNT0052800.1 | 1 | 39963145 | T | G |
| Osa01LNT0052800.1 | 1 | 39963293 | T | G |
| Osa01LNT0052800.1 | 1 | 39963713 | T | C |
| Osa01LNT0052800.1 | 1 | 39964201 | C | T |
| Osa01LNT0052800.1 | 1 | 39965144 | C | G |
| Osa01LNT0052800.1 | 1 | 39965327 | A | T |
| Osa01LNT0052800.1 | 1 | 39965987 | T | C |
| Osa01LNT0052800.1 | 1 | 39966622 | G | A |
| Osa01LNT0052800.1 | 1 | 39966843 | T | C |
| Osa01LNT0052800.1 | 1 | 39967333 | T | G |
| Osa01LNT0052800.1 | 1 | 39968904 | A | G |
| Osa01LNT0052800.1 | 1 | 39969336 | T | A |
| Osa01LNT0052800.1 | 1 | 39969823 | A | G |
| Osa01LNT0052800.1 | 1 | 39971238 | A | G |
| Osa01LNT0052800.1 | 1 | 39971552 | C | A |
| Osa01LNT0052800.1 | 1 | 39971567 | A | G |
| Osa01LNT0052800.1 | 1 | 39971988 | T | C |
| Osa01LNT0052800.1 | 1 | 39972779 | G | A |
| Osa01LNT0052800.1 | 1 | 39974022 | A | G |
| Osa01LNT0052800.1 | 1 | 39974409 | A | G |
| Osa01LNT0052800.1 | 1 | 39974571 | A | G |
| Osa01LNT0052800.1 | 1 | 39966045 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0052800.1 | osa-miR5526 | Cleavage | 5.0 | 11.679 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR5526 | Cleavage | 5.0 | 14.164 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR5532 | Cleavage | 5.0 | 21.855 | 1 | 22 |
| Osa01LNT0052800.1 | osa-miR5806 | Translation | 5.0 | 18.969 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR2873c | Cleavage | 4.5 | 13.644 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR6252 | Translation | 4.5 | 18.389 | 1 | 23 |
| Osa01LNT0052800.1 | osa-miR6252 | Cleavage | 5.0 | 19.285 | 1 | 23 |
| Osa01LNT0052800.1 | osa-miR159f | Cleavage | 5.0 | 13.678 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR416 | Translation | 4.5 | 19.594 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR435 | Cleavage | 5.0 | 6.078 | 1 | 20 |
| Osa01LNT0052800.1 | osa-miR530-5p | Translation | 4.5 | 16.792 | 1 | 20 |
| Osa01LNT0052800.1 | osa-miR1429-3p | Translation | 5.0 | 14.907 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1430 | Cleavage | 4.5 | 19.164 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1851 | Translation | 5.0 | 17.195 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1428b | Cleavage | 4.5 | 18.597 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1428b | Translation | 4.5 | 13.202 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1428c | Cleavage | 4.5 | 18.597 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1428c | Translation | 4.5 | 13.202 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1428d | Cleavage | 4.5 | 18.597 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1428d | Translation | 4.5 | 13.202 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1858a | Translation | 5.0 | 9.231 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1858a | Translation | 5.0 | 9.153 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1858b | Translation | 5.0 | 9.231 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1858b | Translation | 5.0 | 9.153 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR1865-5p | Cleavage | 4.0 | 16.101 | 1 | 24 |
| Osa01LNT0052800.1 | osa-miR1870-5p | Translation | 5.0 | 17.555 | 1 | 24 |
| Osa01LNT0052800.1 | osa-miR1874-3p | Cleavage | 4.5 | 17.004 | 1 | 24 |
| Osa01LNT0052800.1 | osa-miR1874-3p | Cleavage | 5.0 | 16.228 | 1 | 24 |
| Osa01LNT0052800.1 | osa-miR2106 | Translation | 4.5 | 11.677 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR2864.2 | Cleavage | 5.0 | 19.911 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR2872 | Cleavage | 5.0 | 17.576 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR2876-3p | Cleavage | 4.5 | 22.567 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR2879 | Cleavage | 5.0 | 18.893 | 1 | 24 |
| Osa01LNT0052800.1 | osa-miR2879 | Translation | 5.0 | 13.949 | 1 | 24 |
| Osa01LNT0052800.1 | osa-miR3982-5p | Translation | 5.0 | 17.935 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR5071 | Cleavage | 5.0 | 20.759 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR5150-5p | Translation | 4.0 | 16.998 | 1 | 24 |
| Osa01LNT0052800.1 | osa-miR5154 | Translation | 4.5 | 16.577 | 1 | 24 |
| Osa01LNT0052800.1 | osa-miR5159 | Cleavage | 5.0 | 17.163 | 1 | 24 |
| Osa01LNT0052800.1 | osa-miR5159 | Translation | 5.0 | 9.04 | 1 | 24 |
| Osa01LNT0052800.1 | osa-miR5492 | Cleavage | 5.0 | 9.813 | 1 | 21 |
| Osa01LNT0052800.1 | osa-miR5515 | Cleavage | 5.0 | 13.167 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0052800.1 | 1 | sd1 | Resistance or Tolerance | Drought tolerance | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | nan | Morphological trait | Root | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | Fh1-2 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ730 | RG810 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RG690 | RG810 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RG810 | RZ730 |
| Osa01LNT0052800.1 | 1 | qNOP-1 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | qPHT-1 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | qPL-1 | Morphological trait | Panicle/flower | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | C86 | RZ14 |
| Osa01LNT0052800.1 | 1 | yd1b | Morphological trait | Seed | C547 | C2340 |
| Osa01LNT0052800.1 | 1 | qPH1-1 | Morphological trait | Shoot/Seedling | C86 | RG236 |
| Osa01LNT0052800.1 | 1 | pl1.1 | Morphological trait | Panicle/flower | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | qPHT1-1 | Morphological trait | Dwarf | RZ730 | RG810 |
| Osa01LNT0052800.1 | 1 | sd-1 | Morphological trait | Dwarf | RZ730 | RG810 |
| Osa01LNT0052800.1 | 1 | qRIE 1 | Resistance or Tolerance | Submergency tolerance | C86 | G54 |
| Osa01LNT0052800.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0052800.1 | 1 | FSM | Morphological trait | Shoot/Seedling | nan | nan |
| Osa01LNT0052800.1 | 1 | rrw1b | Resistance or Tolerance | Other soil stress tolerance | C86 | RG236 |
| Osa01LNT0052800.1 | 1 | nan | Physiological trait | Eating quality | RM8084 | RM6827 |
| Osa01LNT0052800.1 | 1 | dth1.1 | Physiological trait | Flowering | RG541 | RG109 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | qRNd1 | Resistance or Tolerance | Other soil stress tolerance | RG236 | C86 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | nan | Morphological trait | Seed | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | tn1-4 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | fll1 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0052800.1 | 1 | ph1 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)