© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0053500.1
AACTTGGAAGAGAGACCATCGATTAAAAGGACAAAAAGTCCTTCAAAAAAAATAAGAACCCTACAAACATGCTGACCATTTTGCACTGTCCTGTACAATCTCTCCTGTAAAAACCTGAGGGCACCACAGATACACAAGGGGGGAAAGAAAAAGAAAGACAAATCCTCCCTAATTTCATCTTCTGACTAATTCTGTATCCTATGGCTAAAGGAATGAACAAAGGTGGGAGGGAGGGGTGAAAAAGGGGGTGGGAGTCATGATCTTCTCCACAGCAATGTTTACAAAATTTCTGCATCGCTACAAAGAGATGAACATGTACACAACACAAAATGGCGCCTAGAGATGCATGTTAATCATCAAGGCGATGAATCTCACCCATCATGATGCGGTTGCTGTGGACCTTGAAGCCAAGAAGAGACGGGTCAATCTGTTTTCCTTTCTTCGTTTTCTTCTTTGCACCCTTGCCGCCCGGGCCACCATCTGCAGATTCAGAGGCATCATACTGCTGCAATGCCGGCTTCTTCGTGCTCTTCACCATTTCCCTGAAGGACGGACCATCGACGCTTGTTCCTGATGGCGAGATGAAAGAGCCTGCCTCTTTGTTAGTGGAGACAGGGATATCCACAGGTTGGGCTGCCGAGGTGACTCCTCCTGATTCCAACTTATGATCATCAGAAGACGCATGGCCTGCTTTCTTCAGCCTAATGGTTGAAGATATATCCGTGGACAATGCCTGAGTTGCAGAACCGTGTTGGCTTGGTGGGCGCTTCAGCAAGGAATGAGTGCCCCCTTTTGGCATGGTAGCTTCAGGCCTGCAGTTGCTACCAGCTTCTTCAGCAAAGTTAGTGTCATCCCCTACCAAGCTCGCGCTTGAACCCTGCCTTTTTCCTCTTGGTACCTCATTGGCAAGTCCAACCAATTGATTACCTGATGCACCACCCCCCATAATACCTGAAAAATCACCCCTTTGCATATCAAGCATTGATCCTGAGCTTGATCTCAGGCCCAACTTTCCACTGTTCTCAATACTGCTAGTCAAACTCTCCAAATTTGCTGCTCCCTCTTGTCCTGCCTGCCCAGCTTTAGCAAAAAGGGACCTTTCTGCAAGAGGATCATCAAAAGACAACCTGTCCGCAGGTGATCTTAAAGGGTTATCTGCAGCAGGCTGTGCAAAGAGCGATGAAGGGTCTTTACGTCCAAAGGATGCCGGTACTGGAACATCAGGATAACCACGAGATTGTTGTGACTGAACTAGTTTTTGATGGAACAAGTCGCTCAAATCTTGCTCTGTGCTCCTCTCGTTGTTCCTAAGTGATGCCCATGCATGTGAATTGTCAACGGCAAGGTTCATTTCCACATTCCTTCGCTGTTTCTGTGCTTCCATTTGCATCTGGCTGATGCGTGAAGGTTCCATAAGTGTGTTTTGCAACTGTCCATTGGCATCTGACCAGTGCCTATCCAGCCTTGCCAAGTTACCAGAAAGCTGTTCCTGAAGCCTGTGTTGCTGCGGATGAACCCCTGAAGGAACCATAGGCATTTGTCCTAGAGAATACAAATCTCCATGTGTTTCTAACTGACCAATGCCATGATGGCGTGCTAGGGAATTTACAACATCCAGGTTAGGTAGAGGAGCGCCACCAGGCAAAGAGCCAGATCTCTCAAGGGAGTGGATACCTTGACCTCCTCTATGCAACCGCTCATGCAAAGACAAGCTCCGCTCGAGATGTTCATGCTGCTCCACCGATGAGGATCTCTGAAGGGACTGCAGAAGATCAAAATGTCCTAGTCTAGAGGCATGGCCTTGGTTCGGACTAGTTCCTGAGCGGATAAAATGACCCGATTCATCCATTGGCCAACCCCCGCTCAAATGTCTTTCTTCCTCTCTGCCTGCATGTTGACGAAGAGCGTTTGCCAATTGTTGTGACTGGAGCTGATCATGGTGAAGACCTAACAGAATTTGTTGCTCTAAAGGAAGCATTTGCCTCTGATTTGAACGTGAGAGAACATCCATCAGATCATTGTGATGCTCCCTATGGATACCTTGCCCAAATTTTGCTTGAATGAGTTGCTCAATCGCTGCATCATGCTGCCTTTGCAAATGGTGGGGCTGGTGATGCAGGTCATTCAATACATGTTCCCGAAGTAATACTTGATCAACCATGTTAGTTGGTCCAAAATTTGAAGCTTGCAACTGTTGCTGCAACATTTGCTCTAGAATCAGCTGTTGCTGTTGCTGTTGTTGCTGTTGCTGCTGCTGTTGAAGAAGCTGCTGGGCTTGACGCTGCTGCAGTTGCCTCTGGTGCTGCTCTTGCTGGAGCTGTTGGCGGCGTTGCTGTTGCTCAAGCTCAAACTGGACTCTCAAAAGATGCTCCACCTCAGGAACCGGTTGATTCATAGACTGCCTGTGTTGGTGCAAAGAATCAAACACCTGTCCTGGAAATGGTCCAGGAAACTCCAGATTGTTCCGAGCCATCAACTGCTCCTGCTGCCGTTGCTCCCTCCGGATCTGTTGGAGAAGCATTTGCTCCTCCATATTCAAATGATTCAAGTCAGGTTCAAGCTGGGGAAGTCGACCTGAAATGTTTGTGTCAGTCACATTGTCCAGACGCCCAAAGTTGGCAGGCCACTCGTCTCGAACAACAGGAGCTTCATTCATCCTGCCAAGCTGCCCATGCCTCATGCTCACAGGCGGAATGTCCTTAGGGGCTGCAGGCTTGGGATTTCTTCGCTCATTTACACCGAGTACGTTAGATGAGAGAGGTTGCTTCGGGTGCATTCCTTCTAACTCAGACCAAAGCAAGCCAAGAGGACTGAGCTCACTCTCTCGGGGAACATCATGCTGGGGCAAATTAGCTTCTCCCATTGCAGCACGGTGATCACGTGATCCCAACTGGAAATCTGAACGGTCATTTTCAAGATCCCGTAGAGACTGACCAGTGCTGCTGTTAGGCCTCGCTGTGTACAAAATTTCTTCAGCATCCAGACTCACTGATTCAGGAATGTGCTGCTGGCGGATATCAACATTAGATGCGGTCTTTTCTGTTTCATGTGAAGGGAGCCAACTCATATGTGACTGAACAGCTGCTTCCTGCTCACCTCTTTTAAGATCAAGAACATAACTTTCAGAATCCCGTTTAGATGTTTGATCATTCTTCCCAAAAGAACCAGAAGCAGGAACCTTGTCATCAAAACTATTATGTACAGAGTCTGGAGATTCACTAGTTTCACCATGGGATACAGGTGGGAGAGGTTGGGGCTTTTGTCCAAGGTGTGGCATTACTTCAAAAAGTGGCCGGAAAGGAGAATCGTCTGGAGAATTAGCCAAACGCACTGGTAACTCCAAACCAAAATATCCATCTTCGTACCAAGAGATTATGTCAGCACCTAGGAATGGACCCTGCATGCCCCCTTGGGGATCCAAATAAAACAGAGTTAAGTCCTCTGGATAGCTAGCCTGGCCACTAGCTTTTGTATCCATGTCATTATTTTGGTACAGCACAGGAGGTTGTTGAATATGCTCAAAGGGTGATTCAAGAAACAGAGAGCTTGAGTCGTTGGGTAGCTTTACACCAAGATCAAGATCAGCACTTGAGTTGACTTCATTAATTTTCGCATCTTCCCGTATGCCAGAAAGCCCAAATTCATTTTGTTCCATAGTAAGGTCCTTTGACGGAAATGTAATACCAGCAGAGATTACCCCTCCGTCATAGAAGGCATCCTTCTCTGAGATTAAAGTGGATGATTCTTCCTGACCCAATCCACTAAAAGCAACAGAGCTTGTATCCTTCTTGCCATCAATACCAGAAGCCAATCCTTCAAGCTCTTTTTTCCTATCTCTTTGCATTCCAGTTGTATTGGCTACTTCACTGCTGATGACCTTACCCTTCATAATATCTTCCCTAACAGCCTCCTCATCAGTATCAGGTGCAACAAAGGCCAGAGGTTTCACAGGAGAAGATAGTACGACAGAAGGAACTTCCTCCAGCTTACAGTGTACGTCATCAAAGGATGGCATTGCCTTTTGTTGCCTGTATATATCAAGAAGTTTGCCCCGTGGGTAGCAAAAGGTAACAGCAGATGATGCACATTTTCCATGTGTAGCAGGAGCACCAATTGGTCCAGCAGAAGATGGCCGGGTGAAGGATGGGATGGAGTTGGGGTTTGCCCTGCCTCTTCCAGCGGAAAAACCAACATTGGACTCCTTCGCACGTCCTTTCTCCAATCCAAATCCCGGAGCAGCGCGGTACGTTCCTGTTCCAGCTGAGTGACTTTCCTGCCGGTGACGAGGTCTCCATTTGTCACGAGAGTCTGTCTCAGTCAGCAGCCTTCCAGTAAATGTCTGTTTTTCAGCATGGCTTTCATCCTTCTCCGCATCAAGCTTCTTTTCCGATCTGGAGTCCTTCTCCTTGTCATCAGGCCCCCATCTTGATGACCATTTGCCATCACGCCGCCCTTCATTCCCTGAACCACGGGTGGATCCATCGTTCCACCTTTCAGATGGGGGTGCTCGTGAATCACCTCCATCCCTCACAGAAACATTATCAGATCGGCGATCATTTTTACGGCTCTCCATATCGCGGTCCACTTCCTTCTTGCGCTCCCTCCTCCCAGGTAGGCTTGTTTCCCTCTCCTCTTCTAGCCAACGAAGGCTACTGTCAGCATCAAATACATTCCGCCTGCGTTCTTTCTTGTCGGCAGCTCCTTCCGGCATCCTTACTTCTTTTTCAGAAGGGTCAAGCAAGGAACCATGACCCAAAATCTTTGCATCAGTTGGTTTAGCATAAAGCCACTGAGGAGACAGAGGAATGCTGTTATCCAGGTGCTGCTGATCTTTGGATTCGTCGACGAAACCTATTGCGGCGGCGGCGGCCATGTCGTCGTCGATCCCCAGCGAGAGCACATCTTTGCCGAGCGCCGCGAATCGATCCATCTTCCTCTCCGACATATCGCCCTCCTCTCGCGGCCGCGGGATCCGAGCGGGGAGGGGGAGTGTGCGCGAAGCTCGCTCGCTCGCTAGGGTTTCGGCGGCGGCGGCGGCGGCGGCGGCGGGAAGCGGAGCAGGCGCGCGGGGGGAGGGGGGGAGGCGGCTGCGGCTGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGGCTAGGGTTTCGAGCGCGGGGGTCGCCGGAGAGTGAGGAGGAGGAGATGGGTCGTGTTGTTTAGGGAGGGAGGCTTTTCCGTGCGCTTGGTCTCTTTCGATTCGAGAGGCGATGGGTTTGGGTGCGATGCGATGCGTTGGGAGCGGAGAAGGGGAGGAGAAGGAT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0053500.1 | 1 | 40483348 | C | T |
| Osa01LNT0053500.1 | 1 | 40483946 | A | G |
| Osa01LNT0053500.1 | 1 | 40484043 | G | A |
| Osa01LNT0053500.1 | 1 | 40484495 | A | G |
| Osa01LNT0053500.1 | 1 | 40484526 | A | T |
| Osa01LNT0053500.1 | 1 | 40485382 | A | C |
| Osa01LNT0053500.1 | 1 | 40485466 | T | G |
| Osa01LNT0053500.1 | 1 | 40486283 | A | G |
| Osa01LNT0053500.1 | 1 | 40486877 | T | G |
| Osa01LNT0053500.1 | 1 | 40488205 | A | G |
| Osa01LNT0053500.1 | 1 | 40488321 | T | C |
| Osa01LNT0053500.1 | 1 | 40488340 | G | C |
| Osa01LNT0053500.1 | 1 | 40489137 | G | C |
| Osa01LNT0053500.1 | 1 | 40487607 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0053500.1 | osa-miR5527 | Translation | 5.0 | 22.206 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR5542 | Cleavage | 5.0 | 8.374 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR5821 | Cleavage | 5.0 | 19.923 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR5829 | Cleavage | 4.5 | 22.191 | 1 | 24 |
| Osa01LNT0053500.1 | osa-miR5834 | Cleavage | 5.0 | 20.093 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR6250 | Translation | 4.0 | 16.182 | 1 | 22 |
| Osa01LNT0053500.1 | osa-miR6253 | Cleavage | 3.5 | 14.184 | 1 | 22 |
| Osa01LNT0053500.1 | osa-miR399d | Translation | 4.5 | 18.264 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR399j | Translation | 4.5 | 18.264 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR319a-3p.2-3p | Translation | 3.5 | 17.069 | 1 | 20 |
| Osa01LNT0053500.1 | osa-miR319b | Translation | 3.5 | 17.069 | 1 | 20 |
| Osa01LNT0053500.1 | osa-miR169i-5p.2 | Translation | 5.0 | 15.903 | 1 | 22 |
| Osa01LNT0053500.1 | osa-miR440 | Cleavage | 4.0 | 20.252 | 1 | 24 |
| Osa01LNT0053500.1 | osa-miR528-5p | Translation | 5.0 | 17.743 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR535-5p | Cleavage | 3.5 | 16.604 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1850.1 | Translation | 5.0 | 14.483 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1855 | Cleavage | 3.0 | 14.777 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1855 | Cleavage | 5.0 | 17.284 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1428b | Translation | 4.0 | 15.987 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1428c | Translation | 4.0 | 15.987 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1428d | Translation | 4.0 | 15.987 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1428e-3p | Translation | 4.0 | 15.987 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1858a | Translation | 3.0 | 18.39 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1858a | Cleavage | 4.5 | 15.817 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1858a | Translation | 4.5 | 20.445 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1858b | Translation | 3.0 | 18.39 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1858b | Cleavage | 4.5 | 15.817 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR1858b | Translation | 4.5 | 20.445 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR812f | Translation | 5.0 | 20.587 | 1 | 24 |
| Osa01LNT0053500.1 | osa-miR2096-3p | Cleavage | 5.0 | 16.31 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR2103 | Cleavage | 3.5 | 21.613 | 1 | 22 |
| Osa01LNT0053500.1 | osa-miR2927 | Cleavage | 4.5 | 23.82 | 1 | 23 |
| Osa01LNT0053500.1 | osa-miR5151 | Cleavage | 3.0 | 16.565 | 1 | 22 |
| Osa01LNT0053500.1 | osa-miR5504 | Cleavage | 5.0 | 16.569 | 1 | 21 |
| Osa01LNT0053500.1 | osa-miR5513 | Translation | 4.5 | 17.766 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0053500.1 | 1 | nan | Physiological trait | Eating quality | RM8084 | RM6827 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | qRNd1 | Resistance or Tolerance | Other soil stress tolerance | RG236 | C86 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ730 | RG810 |
| Osa01LNT0053500.1 | 1 | nan | Morphological trait | Seed | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | tn1-4 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Other disease resistance | RG109 | RG236 |
| Osa01LNT0053500.1 | 1 | sd1 | Resistance or Tolerance | Drought tolerance | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | nan | Morphological trait | Root | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | Fh1-2 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | fll1 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | ph1 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RG690 | RG810 |
| Osa01LNT0053500.1 | 1 | qPH1-1 | Morphological trait | Shoot/Seedling | C86 | RG236 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | C86 | RZ14 |
| Osa01LNT0053500.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RG810 | RZ730 |
| Osa01LNT0053500.1 | 1 | qNOP-1 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | qPHT-1 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | qPL-1 | Morphological trait | Panicle/flower | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | yd1b | Morphological trait | Seed | C547 | C2340 |
| Osa01LNT0053500.1 | 1 | pl1.1 | Morphological trait | Panicle/flower | RZ730 | RZ801 |
| Osa01LNT0053500.1 | 1 | qPHT1-1 | Morphological trait | Dwarf | RZ730 | RG810 |
| Osa01LNT0053500.1 | 1 | qRIE 1 | Resistance or Tolerance | Submergency tolerance | C86 | G54 |
| Osa01LNT0053500.1 | 1 | sd-1 | Morphological trait | Dwarf | RZ730 | RG810 |
| Osa01LNT0053500.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0053500.1 | 1 | rrw1b | Resistance or Tolerance | Other soil stress tolerance | C86 | RG236 |
| Osa01LNT0053500.1 | 1 | FSM | Morphological trait | Shoot/Seedling | nan | nan |
| Osa01LNT0053500.1 | 1 | nan | Morphological trait | Root | RG109 | RM104 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)