\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa01LNT0055800.1

GTTCTTTGCCATAACGCCCATTCCGGGACGAGTTGGAAGAGGAATTCCAAAATATTACACGGATGAGACTCATCGCACCGGATCAGTCTCTTAGACGGATGAGACTGATCACACCTGATCAGTGATCAATTCTGGCACAATGAATTTACGAGTTATTTTACACAATGAATTTACAAGCAGATGAGTTTGCAACGGTAGACCTATCTCCTGAAAAGAGATCAGTAAACAAGGGAACGAAGCGACCGATAACGTCCCCTCGGGGAGGAGTGTTTTAAGGGATTGACTTCGGCTCCTATTATCTTTGTTTACAAATCTTAAAATTGGTGAATTGGTTAATAGGAAGTGCGCGCTAGCACGCTTCATATTTCTAGTAACAAGGGCAGTTGTTTGTTTGGACGTTAGATCAGAGGGCGCTCATCCCTTGCTCGGTCCCTGAAAATGAGATAACATAGGCTTTTGATATCTGCTGTGTCAACAAGCCCTGGTTCAATCCCTGCTTCTTCCGGGCCTTATCCCGAAAGAGGTCAACAATTCTTTTTGTGTAAAGCCTTTTGTTCACTGGTCTTCACTTCAAGCAATTCCATTAGTCCAAGTCTGCTGCAATTGGTAATAGGAGACTAGAGGTTGGGACGCGCCGCCCTTTGCAAGGTCGATGTAACAACTTGGTCAGAAGAGTCAGGCCCCTGCTTTCCTTGGCTTTCCTTTGATGAGCACAAAAACATAGTTAAATTGTCTAAGAGACCCAGTTTTGGAAATAGATGACAAACAGTTTGATGCAAGATGGTTTTTCACACTGAACAAATATAG

Coding Potentia
Explanation CPC Score
noncoding -1.2628
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0055800.1 osa-miR5501 Cleavage 4.5 17.924 1 21
Osa01LNT0055800.1 osa-miR5508 Cleavage 5.0 19.715 1 21
Osa01LNT0055800.1 osa-miR5508 Cleavage 4.5 22.71 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0055800.1 1 grl1-1 Morphological trait Seed RM431 RM104
Osa01LNT0055800.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0055800.1 1 qRNd1 Resistance or Tolerance Other soil stress tolerance RG236 C86
Osa01LNT0055800.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0055800.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0055800.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0055800.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0055800.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0055800.1 1 tn1-4 Morphological trait Culm/leaf RZ730 RZ801
Osa01LNT0055800.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0055800.1 1 nan Morphological trait Seed RZ730 RZ801
Osa01LNT0055800.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0055800.1 1 fll1 Morphological trait Culm/leaf RZ730 RZ801
Osa01LNT0055800.1 1 ph1 Morphological trait Dwarf RZ730 RZ801
Osa01LNT0055800.1 1 nan Resistance or Tolerance Drought tolerance RZ14 R117
Osa01LNT0055800.1 1 nan Resistance or Tolerance Other disease resistance RG109 RG236
Osa01LNT0055800.1 1 sd1 Resistance or Tolerance Drought tolerance RZ730 RZ801
Osa01LNT0055800.1 1 nan Morphological trait Root RZ730 RZ801
Osa01LNT0055800.1 1 nan Resistance or Tolerance Drought tolerance RZ730 RZ801
Osa01LNT0055800.1 1 nan Resistance or Tolerance Drought tolerance RG810 RZ730
Osa01LNT0055800.1 1 Fh1-2 Morphological trait Dwarf RZ730 RZ801
Osa01LNT0055800.1 1 nan Resistance or Tolerance Drought tolerance RZ730 RG810
Osa01LNT0055800.1 1 nan Resistance or Tolerance Drought tolerance RG690 RG810
Osa01LNT0055800.1 1 qNOP-1 Morphological trait Culm/leaf RZ730 RZ801
Osa01LNT0055800.1 1 pl1.1 Morphological trait Panicle/flower RZ730 RZ801
Osa01LNT0055800.1 1 qPL-1 Morphological trait Panicle/flower RZ730 RZ801
Osa01LNT0055800.1 1 yd1b Morphological trait Seed C547 C2340
Osa01LNT0055800.1 1 qPHT-1 Morphological trait Dwarf RZ730 RZ801
Osa01LNT0055800.1 1 nan Resistance or Tolerance Drought tolerance RZ14 R117
Osa01LNT0055800.1 1 qPH1-1 Morphological trait Shoot/Seedling C86 RG236
Osa01LNT0055800.1 1 qPHT1-1 Morphological trait Dwarf RZ730 RG810
Osa01LNT0055800.1 1 nan Morphological trait Culm/leaf RZ801 RZ14
Osa01LNT0055800.1 1 qRIE 1 Resistance or Tolerance Submergency tolerance C86 G54
Osa01LNT0055800.1 1 sd-1 Morphological trait Dwarf RZ730 RG810
Osa01LNT0055800.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0055800.1 1 FSM Morphological trait Shoot/Seedling nan nan
Osa01LNT0055800.1 1 rrw1b Resistance or Tolerance Other soil stress tolerance C86 RG236
Osa01LNT0055800.1 1 nan Morphological trait Root RG109 RM104
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus