© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0055900.1
AGACGGATGAGACTGATCACACCTGATCAGTGATCAATTCTGGCACAATGAATTTACGAGTTATTTTACACAATGAATTTACAAGCAGATGAGTTTGCAACGGTAGACCTATCTCCTGAAAAGAGATCAGTAAACAAGGGAACGAAGCGACCGATAACGTCCCCTCGGGGAGGAGTGTTTTAAGGGATTGACTTCGGCTCCTATTATCTTTGTTTACAAATCTTAAAATTGGTGAATTGGTTAATAGGAAGTGCGCGCTAGCACGCTTCATATTTCTAGTAACAAGGGCAGTTGTTTGTTTGGACGTTAGATCAGAGGGCGCTCATCCCTTGCTCGGTCCCTGAAAATGAGATAACATAGGCTTTTGATATCTGCTGTGTCAACAAGCCCTGGTTCAATCCCTGCTTCTTCCGGGCCTTATCCCGAAAGAGGTCAACAATTCTTTTTGTGTAAAGCCTTTTGTTCACTGGTCTTCACTTCAAGCAATTCCATTAGTCCAAGTCTGCTGCAATTGGTAATAGGAGACTAGAGGTTGGGACGCGCCGCCCTTTGCAAGGTCGATGTAACAACTTGGTCAGAAGAGTCAGGCCCCTGCTTTCCTTGGCTTTCCTCAACTGTAAAAATATGACTCTAGTCCCACCTTTCCAATATTAGAGACCAGCTAGCAACTGTTCTAAAGGACACACTCATCACTGAAACTGAAGCTAAGTTATTTGAGATGGACTGAGGAGATCAATGTGTAACTTGATTTCTTCAGACATGACCTTAAAAACTCAAAGAATTGTTGAACAAATGGTGAAGGCGGAAGAGTTGAAGAATTTGTCTATCCATTTGAAGGAATCAAAAGAGAAGGCTGAAAAGCTGAAAGAAAGGAGAAAACAAAGATCATATAGTGAGCATATTTTTATTTGCACCTCTTAAGTGATTGTGCCAGATGTAGGTCAAAAAACTCCTCGTATGACATCTGCTTCATGGTAGAGGTGTGGCTTAGAATACACCGAATTCTTGAAAGGTGCATGTTCATGTATTTGGTATGACAAGATTAAAAATTAAATTTGAGGGTAGCAAAGAGCATTAATCGAACAAATTTCTAAAGAAAATCTATGTAGAAATATCAGAATAGAAAATGAAATGATAGCCTTGGGTAAAATTTATCACCAACAACTCAATTCTGATTGAAATAGCAGAAAAACATAATATTGCAATACGTATTAAATAACTCTGAAAATATTCAACACTCTCCAACAAAAGTATTATTTTGATGATAGGATTTAGGACCCTTTTTTTGAAATCTGAAACATCTCAATCCGTTTTAGAAGAAACTGATTCAAATTATAACATGGATACAGAGGATAATAATGCCTTTTGTAAAGCAATTGTAAGATATACATGATCAAATATCAGCTAGAAAGGCAGTTGGGCTAGCAAACCATGGTGTCATTCAAAATGTATACTTGATGGAAAGACCTTCAATAAAAACTTGGGTAAAGTCCCTGTTTGGAGGAAACATAAGCTCATTTTCCTAAATAGAAATTTACCATGAATGGAAGTTTTGTTTTTCAAATAAACCAATTAGATAGATTATCCAGCAAATGCTTTCGCAAAAAATGTTTGTTTTGTTTTTTCAGCAGAAAAAATAGATGCTTATGTGATCACTGATCAGTGATCCCCAAATTAACTACTCTTCGTTACATGGGCAAAATAGCATATATTTCACGCTGTAAAAAAGAAAACCAGTTAAATAGGATAGGGTGACATGCTGAGTTTGAATTTAGCTTCGGAGAAGTAGTTTAATAGATATAACTGAAATATCGAACAATGGAGATGTTATATTGACTGGTATTAGAATAACAAAAAAAAAATTTGAGCAAGAACCTTAGTTATTATTTTGGTTGTAAAAAGTGATGAACGAACCAGAAAACAAAACATAAACCTAGTTCAATCTAGTTCCCTATAACAAAGTACAAGCACAACTAAGTGTTCTTTTAGCATTATCAATATACCAATTTATTTCTTCAAATCACAACAGGGTTTACCCCCTTCATCGGTCAACGAAATCATGCTTACCTCATAGAGTGGTTACAACGAACAAATCATAAAGTTTGCCTTGCTACAAGATGAAATAGAAATATCCTTATTCTTGATCTGTATAAATTCAAGAACTATAGAAAAAGGATTTCTGTCCACATTCTGGTCAGTAAATACTTATGGCTAATGGCTAGTCCTAATCACAGGTTTGTCATCAGAAATGAACATGCCTACTATATTCCCTAGGTGGAAATATGGATCTTTTTCCCCATTTCAGAAGATAGGTTTGAAATACAAAGTATACTATATGGACAAAACATTACTGGAGAAACAATTGTTACAGCGAAGAATTCAATTACCTTGGCCCCAAGAGCCGCCATGATACTATCAGCAGCCCATGGCATGTTGTTGATCCAAACCAACACAAATGGACCATCAAGGGATCATAACTCTGAACCTTAAAACTCAACAGAAAGACCTTGATAAGAACACAAATACTTTCCATTTAGTTTTTGACATTTTACAGTGCAATTCTTGAGTTGGTTAATGGCATATCCATATGCCTTGCTGCCTGGGGCAGCAATTAAGAGAAGACTCCCATAATATTTTCTCAGTTTGGACTGAAGACATCATTTTCCTACAAATATGCCGATATTCTTGAACTTCCTGCTCAGTAATCACATTATTTGTTGTAACTAACGCGTCTAGAATATGAGTGATGTTGAGAAAATTGAGGACAACTCCAGGAAAATAATAGTAAGCAATTTTTAGGTGAAGGCTAAAGGAGTAAGTTCGTAGCTGAAAATTTTGCCTAAGCTTGCATATACACCATATTGTTAAATGCATTTTTATCCCTGAGGCCTACACCCTACATATTTGCATGTATGGCATAAAGGTGCATGAAGACAAGTAGTCCATTGATGACAGAGGTGATCGAGTAAACAACTAAAGAAACGAAACGCTGAATACAAAATCAAAGCATGCACTTCTCACTCAAACTCAATATCCATATCAGCCACCAAACCTGAAATTTATTATTATCATTATTCCTACATAGTGATAGCTAACAAAGTATCATTAGGATTCGATTAAATGGATTCCAATTTTGTGGCATACCCCAATACATATGGTAGGAACTAAAAATTTTCTTATTCGCCTGCAGAATGGTGCACACAACCAAGGACTGCCTGTGACCTAAGAGCAGTAAATCTTCTAAAGGAAGACCTTGCCCTACAGCATCTGCTGAAAATTCCACATGTAAAACTCATAACACTAAGCTGAGATGAGCAAAAATCATTGACACATACTTGTTTTACTTGCCGTTGTACATGGTACTGAAAGTGTCTACATGATGTCCTCTACAGTGTTTGTGTCAGGTGAGGCAATGAAAGATATCTACACTTCTGAATGGTTCATGGAGCAGGGGTTCTCATCTGGTGAAGATTCTCATGTACAGATTCTACGTATGTGGTTTGAAGCTTTGAAACACAGATCCACTTAGTTGTCGGTACTCCAGTCATCGGTGCCTAGACAAATCTATCTCCAACTCTTTGAGTTATTGGCTCTAGCATCCTAGAACATGCAAAACCAGTATTGAAGGACGAGTCTGTGTATCTCTTCAAGCAAGCTCCCTCACCCCTAATGTCATACTTGTCACGTATGAACAATTTTGGAGGCCCATGACACTGCTTGATGGAGTCCATAATGAAACAAAGTGTGTGAGTGTGTCACCTTTTGTCACAACCCCACTGTCTAACCTCGAATTCAAATGCCAACAAATTCCCCTGTTAGAAGCAACATACAGGTAGTCTGTATGCAAAGATCACAAGAGTTATTCTCCACGAGTGGCAACTCTGCCTCCAGCTGCTGAACTGAACATATCATGGAGAACGTCTGTGCAACATATCTTACTTGAATACTGGGCCTCAACATAAGGCCATATCGTTTCCATGGTAAGGCTTATGCAACTCCAGATGAAATAGAATGGTCATCTTGTTTCTCCAGTACATTTTCCATGATCTTGAAGCAATCCATAAATAATGAGGAAAACCCGCATGCTGCTATCCCTTTGTCAGCAACATATACATCTGGGAACGTCGTTGTCGCCGTGCCGTGGCCGAAATCCATCGCGCCGACCTCCGCAATGCCCCTGCCGTCCCTCTCGACCCTGGCTCCAACATCTCCTCTGCTTGCGATGTGCGCCACTGTTGCTTGGATCCAAGGCCACCGCCACCGGTCCGTGACCGCGTCTCCCTCCTCAGCTCCTCCAAGCTGGACCTTCCTCTCACTGCCGCCCCAACACCTTGTACGCCACCGGTGCACAGGAGCTCATCCCCGCCGGCCATGGCCGCACTACGGATTGGGACGAGACAGGCCGCTACCCCAGCGCCTTCTCGGCACCTGGCACAAGGGGGCTCGACCCCGCCGCCATGACAGCGCTAGGGTTTGGGGCGAGACCACAGGGCTGATACAACACTGATGGGGAGGAAGAAATGGAAGCGGTGAGAGCTAAAGGAGAGGGGGAAAAGAGCAGTGGTTTGCTGGCGGAGGAGACGATGCGCGGTCCACCTCAGGCGAGCGAGGCGACGCCGCAGCCGGCGGCTGTCATCCTGTCGAGGGAGAAAGCAAAGGGGGTGAGGCGAAGGGGGATAGAGTTGGGGGAGAAAGCGAGGGGAAGGCGGAGGCGGCGGGGACGACGATGGCGACGGCGCGAGGCGGAGGCAGCGGCGGCGTGAAGGGGAGAGGGAGAGGGAGAGGGAGAGACGAGAGGGAGGAGAGTGCGTGAGGGCGGCGGCGGCTAGGGCTGGATGCGGCCACCGTGGCGGAGGTCAACGCGGCGGCGGCGGCGGCGCGAGGGGAGGCGGACGCGGCGGCGTCATGATGGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0055900.1 | 1 | 41490492 | T | C |
| Osa01LNT0055900.1 | 1 | 41490901 | A | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0055900.1 | osa-miR5528 | Translation | 3.5 | 13.12 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR5541 | Cleavage | 4.5 | 16.125 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR5542 | Cleavage | 4.5 | 18.924 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR5143b | Cleavage | 5.0 | 5.896 | 1 | 24 |
| Osa01LNT0055900.1 | osa-miR5143b | Translation | 5.0 | 16.998 | 1 | 24 |
| Osa01LNT0055900.1 | osa-miR398a | Translation | 4.5 | 18.795 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR172a | Cleavage | 4.5 | 18.613 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR172b | Cleavage | 4.5 | 18.613 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR172b | Cleavage | 5.0 | 6.942 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR172c | Cleavage | 4.0 | 18.613 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR172d-3p | Cleavage | 4.5 | 18.613 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR1426 | Cleavage | 4.5 | 18.613 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR1442 | Translation | 4.5 | 14.52 | 1 | 20 |
| Osa01LNT0055900.1 | osa-miR1442 | Translation | 5.0 | 16.34 | 1 | 20 |
| Osa01LNT0055900.1 | osa-miR1854-3p | Translation | 5.0 | 14.708 | 1 | 22 |
| Osa01LNT0055900.1 | osa-miR2095-3p | Cleavage | 3.0 | 11.95 | 1 | 20 |
| Osa01LNT0055900.1 | osa-miR2097-3p | Cleavage | 4.0 | 14.466 | 1 | 22 |
| Osa01LNT0055900.1 | osa-miR396f-5p | Translation | 5.0 | 24.368 | 1 | 22 |
| Osa01LNT0055900.1 | osa-miR2863a | Cleavage | 5.0 | 14.711 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR2920 | Translation | 5.0 | 13.372 | 1 | 23 |
| Osa01LNT0055900.1 | osa-miR2931 | Cleavage | 4.0 | 16.965 | 1 | 20 |
| Osa01LNT0055900.1 | osa-miR3979-5p | Cleavage | 4.0 | 9.739 | 1 | 20 |
| Osa01LNT0055900.1 | osa-miR5081 | Translation | 4.5 | 14.158 | 1 | 22 |
| Osa01LNT0055900.1 | osa-miR5143a | Cleavage | 5.0 | 5.896 | 1 | 24 |
| Osa01LNT0055900.1 | osa-miR5143a | Translation | 5.0 | 16.998 | 1 | 24 |
| Osa01LNT0055900.1 | osa-miR5490 | Cleavage | 3.5 | 14.899 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR5501 | Cleavage | 4.5 | 17.924 | 1 | 21 |
| Osa01LNT0055900.1 | osa-miR5508 | Cleavage | 4.5 | 17.778 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0055900.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0055900.1 | 1 | FSM | Morphological trait | Shoot/Seedling | nan | nan |
| Osa01LNT0055900.1 | 1 | rrw1b | Resistance or Tolerance | Other soil stress tolerance | C86 | RG236 |
| Osa01LNT0055900.1 | 1 | nan | Morphological trait | Root | RG109 | RM104 |
| Osa01LNT0055900.1 | 1 | grl1-1 | Morphological trait | Seed | RM431 | RM104 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | qRNd1 | Resistance or Tolerance | Other soil stress tolerance | RG236 | C86 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Morphological trait | Seed | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | tn1-4 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | fll1 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | ph1 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Other disease resistance | RG109 | RG236 |
| Osa01LNT0055900.1 | 1 | sd1 | Resistance or Tolerance | Drought tolerance | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Morphological trait | Root | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ730 | RG810 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ14 | R117 |
| Osa01LNT0055900.1 | 1 | Fh1-2 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RG690 | RG810 |
| Osa01LNT0055900.1 | 1 | yd1b | Morphological trait | Seed | C547 | C2340 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RG810 | RZ730 |
| Osa01LNT0055900.1 | 1 | qNOP-1 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ14 | R117 |
| Osa01LNT0055900.1 | 1 | qPHT-1 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | qPL-1 | Morphological trait | Panicle/flower | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | pl1.1 | Morphological trait | Panicle/flower | RZ730 | RZ801 |
| Osa01LNT0055900.1 | 1 | qPH1-1 | Morphological trait | Shoot/Seedling | C86 | RG236 |
| Osa01LNT0055900.1 | 1 | qPHT1-1 | Morphological trait | Dwarf | RZ730 | RG810 |
| Osa01LNT0055900.1 | 1 | nan | Morphological trait | Culm/leaf | RZ801 | RZ14 |
| Osa01LNT0055900.1 | 1 | qRIE 1 | Resistance or Tolerance | Submergency tolerance | C86 | G54 |
| Osa01LNT0055900.1 | 1 | sd-1 | Morphological trait | Dwarf | RZ730 | RG810 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)