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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0056900.1

GTTGCAATGGAGCACTTGTCACGTACGTCTATCCGCTCGAGAAACCGATGGATTCATCCATGGCTGCTTCTGCCGCTGCTATCCGATAATCCGTCTACGGCGCTGGGTGCAACGAGCGTACGCGCAGGGCGCGCGCGTGCAGCCTGGTGAGCGTGTGTCGGAACCTGGAGAGGTCGAGGGTGACGTTCTGGCCGCCGAGGTAGACGCGGGCGACGAAGCCCCACCCCTTGTCGCGCTTGGCGGCCTCCGGGTCGGACACCACCACGTCGCGGAGGCCGTACTTGCGGCTCAGCGAGCTCTCGTGCCCCTCCGCGTCGTACTGCTCGTAGTGCAGCCCCATCCGCGCGGAC

Coding Potentia
Explanation CPC Score
noncoding -1.25551
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0056900.1 1 42135661 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0056900.1 1 nan Morphological trait Seed RZ730 RZ801
Osa01LNT0056900.1 1 tn1-4 Morphological trait Culm/leaf RZ730 RZ801
Osa01LNT0056900.1 1 fll1 Morphological trait Culm/leaf RZ730 RZ801
Osa01LNT0056900.1 1 ph1 Morphological trait Dwarf RZ730 RZ801
Osa01LNT0056900.1 1 nan Resistance or Tolerance Other disease resistance RG109 RG236
Osa01LNT0056900.1 1 sd1 Resistance or Tolerance Drought tolerance RZ730 RZ801
Osa01LNT0056900.1 1 nan Morphological trait Root RZ730 RZ801
Osa01LNT0056900.1 1 nan Resistance or Tolerance Drought tolerance RZ730 RZ801
Osa01LNT0056900.1 1 nan Resistance or Tolerance Drought tolerance RZ14 R117
Osa01LNT0056900.1 1 ph1.2 Resistance or Tolerance Drought tolerance RM104 RZ801
Osa01LNT0056900.1 1 Fh1-2 Morphological trait Dwarf RZ730 RZ801
Osa01LNT0056900.1 1 nan Resistance or Tolerance Drought tolerance RZ730 RG810
Osa01LNT0056900.1 1 nan Resistance or Tolerance Drought tolerance RG690 RG810
Osa01LNT0056900.1 1 nan Resistance or Tolerance Drought tolerance RG810 RZ730
Osa01LNT0056900.1 1 qNOP-1 Morphological trait Culm/leaf RZ730 RZ801
Osa01LNT0056900.1 1 qPHT-1 Morphological trait Dwarf RZ730 RZ801
Osa01LNT0056900.1 1 qPL-1 Morphological trait Panicle/flower RZ730 RZ801
Osa01LNT0056900.1 1 nan Resistance or Tolerance Drought tolerance RZ14 R117
Osa01LNT0056900.1 1 qPH1-1 Morphological trait Shoot/Seedling C86 RG236
Osa01LNT0056900.1 1 pl1.1 Morphological trait Panicle/flower RZ730 RZ801
Osa01LNT0056900.1 1 qPHT1-1 Morphological trait Dwarf RZ730 RG810
Osa01LNT0056900.1 1 sd-1 Morphological trait Dwarf RZ730 RG810
Osa01LNT0056900.1 1 qRIE 1 Resistance or Tolerance Submergency tolerance C86 G54
Osa01LNT0056900.1 1 nan Morphological trait Culm/leaf RZ801 RZ14
Osa01LNT0056900.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0056900.1 1 rrw1b Resistance or Tolerance Other soil stress tolerance C86 RG236
Osa01LNT0056900.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0056900.1 1 qRNd1 Resistance or Tolerance Other soil stress tolerance RG236 C86
Osa01LNT0056900.1 1 nan Morphological trait Root RM1387 RM1067
Osa01LNT0056900.1 1 ph1 Morphological trait Dwarf RG236 C547
Osa01LNT0056900.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0056900.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0056900.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0056900.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0056900.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0056900.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0056900.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus