© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0057300.3
CAGCAAATAAAATTCGATTTACATTACACTACTTGTTAGTCAGATGTTTTTAAAGTTAAATCTTTAAATACATGCGTGTCTTACACTATGGAGTATATAACAAATAATGTTCAGCGAGGATTGATGCTAGGTACAACACCGCTGAGGAGGTTACTGCCGGAGACATCGGATGATGACATGTTGTAGTGATGGTGATCATCATTTCCAACCCCAGATGACGATGAAACCATCATCCTGGATCCCGACGATGGGGTGGCTGTGTTGCTAGGTTCCAAGGATAGTGAGGACATGCTCCCGGTGTCCGGTGTCATTTGCCATATCTTCTCCAGCTCCCTCATCACCTCCACTATGGACGGCCTTGCGTCCGTCTCGTCTCGGCAGCATCTCAGTGCCAGTGCAGCAAACTTCTCCACGCATTCTGCTGGGTACGATCCCATCCGGCTGTCAACCACTGACAATATCATCCCACTCTGATTGGCCGCAACAACCTCTCTAACTATATTTCTTCCATGAGAAATAGGTTGCATCCCTGTCAGCAGTTCCAGAAAAACAACACCAAGGCTGTACACGTCACTTTTGTCTGTCAGCTTATGAGTAAGGAAATACTCCGGATCAAGATAACCCGGGGTACCCTTTATAACAGTTGACACATGACCAGGAGCAATCCCCTCTGATTCTGGCTCTGGGGCAAGCCGAGAGAGACCAAAATCAGCAACTTTTGCGACAAACTTTGAGTCCAGTAAAATATTGCTTGCTTTGATGTCACGGTGAAATATTGGAGGGTCTGCTTCTGTGTGTAAATAGAGGATGCCTCGCGACGACCCCAGCGCAATTCGTAACCTCGTGGGAAAATTTAGGGGCTCTTTTGATCGAGCTGAAAGATGATCACGTAGAGTACCATTAGGCATAAACTCATATACCAGCATCTGCTCATCTTCTTCATCACAATAACCAAGCAATGAAACAAGGTTCCGGTGATGCAGCCTGGACAGCAATTCTATCTCTGTGAAGAACTCCTTCGAACCCTGAAGAGATCCCTGCTGCGCACGTTTTATTGCTACTATTGTTCCATCAGAGAGAATACCTCTGTACACTTTCCCATACCCTCCTTGACCAATTAGTGCTGAGTCACTAAAGTCGTTTGTACCATGTGACAGTTCTTGAAAACTGAAGTCTTTTACACCATCAATCTTCATTGGAATTCTTTTTGCAGAGCGTCTTTTTGAAGAATATCTTGAACGTCTTCTCAGTATAATGAGAGTAATGAGGGATGAAAGAAATGCTGCTGCAGCAAACGCTGCCACGACAATACCAACAATGGCACCTGTACTTAGGCTGGACTTTGCACGATCTGGAAATATATATCTTGACCATACACAAGTGCTTTTTGTTTAGTAGTAAATGTGCACAGTGTATTTTTCCTGTAGTGTAGGACTGTAAGGTGTTTTCTGTTAATTCATCTCTAGTATATCCAGAAACCACCCATGCATGCTTCTTGTTAAGTAGTATATGTGCAGAGTGTATTCCCTGTAGTATAGGGGCTTTCTTTCTGTAAAGCCATCTCTTGTATATCCAGGGATCCAGCCCCTATGGGTACATTGAAACACAAGTTACAAGTAATTGAAACTTCTGGATGATGGAAGAAATCAAGAAATCAATCCCAGCTACAGGCAACAACCAGCAAGTGTGGCGGTGTGGCCTGGCATGTCGTGATGCAAGAGTATACCACCTTCTGATGCAGTGATGCTTACATCTTACTCCCCTGATTCCAAATGTAAGATGTTATAGGACTTAGAGGCACTTTTCAATGTATAATAGTTCCTCTTATTCCAAATTCCTCTTATGCTAATTAAGTTCTACCACTCATGTACAAATGAGGTATCATTTTAAATGTATAATAGTTGCAGGGCAACAAGGTCATTTGAACAGCTTTCTTAATTCATGTCAACCACTCTAAAACGACCTGACTTTGGAAACAGAGGGTTGATACAAATTATTAGGGAATAGGGTATCTGACACATCAGTAAGCATCTACTATTAATGGGGACAAATGTCCTCCTCAAGCTATGTGTAAATGGTGAATTTGGTTTCTCTACATTATAAGGTCCAAATCAGCCATCCTAGTCTGAAAACTTATTATTCAGTTTACCTCATCCCTTATATCGCCCACTGTCCCAATGGCATCTGGACCAGGAGCAACCTTGTCATTAGGAGTTTGGGACAATGAGAAATTTTGTAAACTTTTTGTGGCATATAAGAAATAAAACTTTCTTTTAGATGGATGGATAAAAAAGAAAGTAAAAGAATTGTCATGATTCACCACTCCTTTGGGTGGTCCTTCAGGATTTGTATGAGAACCTCGTTGAAATGTGAATACTAAACCAAATGTACAATGATATGGGAAATCCTGAAATGCCAATGAATGAATGGAAATTCATTGACTCTCTGAATTGAATTTTGTGAGTCCCTAAACTTAGATTAGCTAGGCAGGGTATTAAATTTCATTGGTTGTTCCTGTTAAGTTCTGACTAGACATTACACAGTGGAAATAGTGCACCCATTACAACCGACATCATTTTTCATAACTTGGTTACTTAGATCAAACCAACTGTTTTCACATACTTATTCTCACAGTTACTGGTCATTTGCATGTTAACTACCATAGACATCCTAATCCTGGTGAGATCCAGAACTATACTTGAAATCAAATATTGAATATTTAAAACCCCTACAAATCAGATAAATGCCAATACAAGAATAAGAAGGAAATGTATAGAGTCAATATAGCATACAATTGTTATACCACCCTGGATTGAAGTTGAGGAGCTCATAGGGCCCGAATATATCAGAGTCTGGAATCAGCCAGCCTGTGAACATTCCTCTCAGTCTTAACACCTCGCTCTTATTAAAATAAGCAGTGTTATTTGGAAACAGTTTCAGATTCATCTTCACCCGTGGGCCTTCTTCCCACATAAATTGAGAAACTTCTAATTGGTAAGAAGACAATGAAAGTCCAGATGACAAGTACTGTTGAAACTGTCCTTCATATGGAACAAAATCCCAAAATCCAGGACTCTTTAGCCGGTAATCAACATAAAGTGGAATAGCACATATACATCGTATTGGTGACATCAGTATGTTTTCAAACGGAAGGTCAGTAGAGCATGGCGGACAAACTGTGGCATTACTTGCAGAACCGTCAGGCACAATAACTGGCACTGATTGACAGTACTGAGTAATGTTCAGTTGATTTGGAGATGTGCAGATGGGGTTTCCAGATAACAGGATGGTAACATTGGCAGGTGGTGAAAGAGGATTTGATAGATTGGTTAGAGAATTGTTCTGGAAATCCAATATAAGACTTCTATTTCCACTGAAATCAATATTCCGCCAGACATCTGATGGAACAGAACCATCCAAATTGTTATTGTCCAATGACAGTCTTTGTAGATTGGGAAGGCCAGAGAAACTTCCAGGAATTGATCCATTTAGAAGATTGTGGGAAAGATCTATTGTGGTTATGTTGCTTGCTGGTCGGCCAGATGGTATTGAACCCCTTAACTGATTCCAACTAAGATCCAGATAGCCAAGTTGGGGTATTCCACTGACATCAGGAACAGGTCCTTCCAAGCTGCAGTTCCTCAAACTCAGTTTCAGAAGTGTGGTGATATTGCCATAAGATGAAGGAATTGAGGTTCCTGAGAAATTATTGTTGTCAAGCTGGATGATAAGTAGTTTTGGTAACTTCGATAACTCTGGAGGAAGATAGCCCGACAAGTTATTGTTATCCAACAATAAGTGAACAAGTGAAGGTAATCTGGATAGTTCAGGTGGAATTTGACCACTTAATGAATTGTTGTTCATATGAAAGTGCTTTGTTTTGTTCAGATTAGCAAATGATTTAGGTATGGGTCCAGATATGTAGTTCTGGTCGATCTGAATCCTATCCAGATTAGGAAGGAAACCAATCTCCTCTGGTAGAGAACCAGTAAGCTGGTTTCCATTTAAGAGCAGTAATTTCAGAGAAGTGATGTTGCCAACCTCCTTAGGTATGCTGCCACTGATGTTATTCCACATAAAATCCATTATTTGCATGTGAGATAGCCGACCAAGCTCAGCAGCTAAAGATCCAGATAAATTCAATTTTAGAAGTTGCAATTCTAATACATGGAGATATCCATCACTTGCTGTTTCATTGTAACAGTGAACATAAGACCAATTTCCCATGCACGGATCTCCACGGTTCCAGTTGTTTAGACGTCCTTGCGGATCTATCAGATTGCCTTTGATAGCTTTCAGAGCATCAACTTCCCAAGGTGCAGTGATCTGTGCTTCTGTTCTTTGCACCAAGTAGAACATGAAGATAATGGAGCAAAGATAGAAGAGTCGAGACTGCCGCATGATGCTACTACACAGAAAATTTGCTCAGTTTGGCAGGATATTGAGAATTCACCGATGTAGTTTCCCTTTGATAGCATAATCCAGTCCCAGCTGGTAGGAGGCAGCAGAAAGAAAGAATCAATCGATCCGCCACACCAATGGAGGATTGTTGTAGAAAAGGACAAACATCGAACTGAATCGATTGACCTCTTCCAGTTTCCTACCAGCTGCCACAACGCAAACTCTTAAATCTCAAATCCCAAATCCTGAATAATTTCTGCTTTTCGCCACGGCCCACGGGTGACACGAGCAGTGATGACAAGAACATTGAAAAGGTGATGGAAAATGTCGTAGTAAATTCGGGGTTTGGTGATGGTGGACTTGGCAACGCCCCTCTCCATCCATCCATCCATCAACCAATCTGTCTCCCTCTGACCTCAGCAGCGCACGCAAATTCATTGAATTCGACTTCGCCACCCCACCTATCTATACGGAAATATCTATCGATCTATATCAACAATATTAAAGGCAGACGACTTCCAGATTGGATTCTTGGACCAAGTAAAACAACAGCAAGAATTGAGGCAGACGGAGGAGGAAGAAGAAGAAAGGGTCAAGCCTTCTGTAGCCAAGGAGGCCATCCTCTTCCTGTAGCCACCAGCCGCCATCCCCATGCTTCGCAAGCTGCCGCAACCATATCAGATTTCTCCCCGCGCTGTAGCGTCGCCGCGACGCTTCCGATCCCCCAATTATTTTCTTCTCTCCGCTCAACACAAAACCGCGTGTTTATATTTTCTGCATTGAATGAATGTGCTACAGTGATTTGCCGTTAATGTTGATGGTTTCGATTTAAAACTGATTTTAACGGAATTTTGTTTGGCTTATATAGGTGGGGGGAGAAATGAACTTTATATACTTCGACAGTAGAGCGGGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0057300.3 | 1 | 42339557 | T | C |
| Osa01LNT0057300.3 | 1 | 42336359 | C | T |
| Osa01LNT0057300.3 | 1 | 42336527 | G | A |
| Osa01LNT0057300.3 | 1 | 42339165 | C | A |
| Osa01LNT0057300.3 | 1 | 42339244 | G | A |
| Osa01LNT0057300.3 | 1 | 42339408 | T | C |
| Osa01LNT0057300.3 | 1 | 42339835 | T | C |
| Osa01LNT0057300.3 | 1 | 42339964 | T | C |
| Osa01LNT0057300.3 | 1 | 42340608 | G | T |
| Osa01LNT0057300.3 | 1 | 42342774 | T | A |
| Osa01LNT0057300.3 | 1 | 42343202 | T | G |
| Osa01LNT0057300.3 | 1 | 42343544 | C | T |
| Osa01LNT0057300.3 | 1 | 42343714 | T | C |
| Osa01LNT0057300.3 | 1 | 42344361 | T | A |
| Osa01LNT0057300.3 | 1 | 42345095 | A | G |
| Osa01LNT0057300.3 | 1 | 42345570 | C | T |
| Osa01LNT0057300.3 | 1 | 42345817 | T | G |
| Osa01LNT0057300.3 | 1 | 42346400 | A | G |
| Osa01LNT0057300.3 | 1 | 42347259 | C | T |
| Osa01LNT0057300.3 | 1 | 42348069 | C | A |
| Osa01LNT0057300.3 | 1 | 42348863 | T | A |
| Osa01LNT0057300.3 | 1 | 42348946 | G | A |
| Osa01LNT0057300.3 | 1 | 42347343 | T | C |
| Osa01LNT0057300.3 | 1 | 42346001 | A | G |
| Osa01LNT0057300.3 | 1 | 42349458 | T | G |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa01LNT0057300.3 | DTM_#DNAt_MULE_japo_Os0312 | Chr1 | - | 42337293 | 42337679 | 386 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0057300.3 | osa-miR5541 | Cleavage | 3.5 | 12.448 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR5789 | Translation | 5.0 | 19.919 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR5825 | Translation | 4.5 | 16.431 | 1 | 24 |
| Osa01LNT0057300.3 | osa-miR6247 | Translation | 5.0 | 15.491 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR156a | Cleavage | 5.0 | 17.037 | 1 | 20 |
| Osa01LNT0057300.3 | osa-miR156b-5p | Cleavage | 5.0 | 17.037 | 1 | 20 |
| Osa01LNT0057300.3 | osa-miR156c-5p | Cleavage | 5.0 | 17.037 | 1 | 20 |
| Osa01LNT0057300.3 | osa-miR156d | Cleavage | 5.0 | 17.037 | 1 | 20 |
| Osa01LNT0057300.3 | osa-miR156e | Cleavage | 5.0 | 17.037 | 1 | 20 |
| Osa01LNT0057300.3 | osa-miR156f-5p | Cleavage | 5.0 | 17.037 | 1 | 20 |
| Osa01LNT0057300.3 | osa-miR156g-5p | Cleavage | 5.0 | 17.037 | 1 | 20 |
| Osa01LNT0057300.3 | osa-miR156h-5p | Cleavage | 5.0 | 17.037 | 1 | 20 |
| Osa01LNT0057300.3 | osa-miR156i | Cleavage | 5.0 | 17.037 | 1 | 20 |
| Osa01LNT0057300.3 | osa-miR156j-5p | Cleavage | 5.0 | 17.037 | 1 | 20 |
| Osa01LNT0057300.3 | osa-miR396c-3p | Translation | 3.5 | 12.497 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR396c-3p | Cleavage | 5.0 | 16.084 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR164d | Translation | 4.5 | 12.307 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR415 | Cleavage | 4.5 | 22.29 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR417 | Cleavage | 5.0 | 10.501 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR818a | Cleavage | 4.5 | 21.461 | 1 | 22 |
| Osa01LNT0057300.3 | osa-miR818b | Cleavage | 4.5 | 21.461 | 1 | 22 |
| Osa01LNT0057300.3 | osa-miR818c | Cleavage | 4.5 | 21.461 | 1 | 22 |
| Osa01LNT0057300.3 | osa-miR818d | Cleavage | 4.5 | 21.461 | 1 | 22 |
| Osa01LNT0057300.3 | osa-miR818e | Cleavage | 4.5 | 21.461 | 1 | 22 |
| Osa01LNT0057300.3 | osa-miR1877 | Cleavage | 4.5 | 9.873 | 1 | 24 |
| Osa01LNT0057300.3 | osa-miR1882e-3p | Translation | 4.0 | 14.291 | 1 | 24 |
| Osa01LNT0057300.3 | osa-miR1320-3p | Cleavage | 4.5 | 11.841 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR2101-3p | Cleavage | 5.0 | 17.263 | 1 | 22 |
| Osa01LNT0057300.3 | osa-miR2275a | Translation | 3.5 | 15.122 | 1 | 22 |
| Osa01LNT0057300.3 | osa-miR2275a | Cleavage | 5.0 | 20.422 | 1 | 22 |
| Osa01LNT0057300.3 | osa-miR2275b | Translation | 3.5 | 15.122 | 1 | 22 |
| Osa01LNT0057300.3 | osa-miR2275b | Cleavage | 5.0 | 20.422 | 1 | 22 |
| Osa01LNT0057300.3 | osa-miR5160 | Cleavage | 5.0 | 5.903 | 1 | 22 |
| Osa01LNT0057300.3 | osa-miR5337a | Cleavage | 4.0 | 15.562 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR5337a | Cleavage | 5.0 | 20.303 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR5338 | Cleavage | 4.5 | 15.29 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR5487 | Cleavage | 4.5 | 15.525 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR5509 | Cleavage | 4.5 | 20.707 | 1 | 21 |
| Osa01LNT0057300.3 | osa-miR5521 | Cleavage | 3.5 | 20.047 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0057300.3 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0057300.3 | 1 | rrw1b | Resistance or Tolerance | Other soil stress tolerance | C86 | RG236 |
| Osa01LNT0057300.3 | 1 | nan | Morphological trait | Root | RM1387 | RM1067 |
| Osa01LNT0057300.3 | 1 | qRNd1 | Resistance or Tolerance | Other soil stress tolerance | RG236 | C86 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ801 | RG323 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ801 | RG323 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | ph1 | Morphological trait | Dwarf | RG236 | C547 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ801 | RG323 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Morphological trait | Seed | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | tn1-4 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | fll1 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | ph1 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other disease resistance | RG109 | RG236 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | sd1 | Resistance or Tolerance | Drought tolerance | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Morphological trait | Root | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | PLFDH | Morphological trait | Panicle/flower | RG323 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RZ801 | RG323 |
| Osa01LNT0057300.3 | 1 | ph1.2 | Resistance or Tolerance | Drought tolerance | RM104 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ14 | R117 |
| Osa01LNT0057300.3 | 1 | PNF(DH)1 | Morphological trait | Culm/leaf | RG323 | RZ801 |
| Osa01LNT0057300.3 | 1 | Fh1-2 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | qNOP-1 | Morphological trait | Culm/leaf | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Drought tolerance | RG810 | RZ730 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ730 | RG810 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Drought tolerance | RG690 | RG810 |
| Osa01LNT0057300.3 | 1 | qPHT-1 | Morphological trait | Dwarf | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | qPL-1 | Morphological trait | Panicle/flower | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ14 | R117 |
| Osa01LNT0057300.3 | 1 | qPH1-1 | Morphological trait | Shoot/Seedling | C86 | RG236 |
| Osa01LNT0057300.3 | 1 | pl1.1 | Morphological trait | Panicle/flower | RZ730 | RZ801 |
| Osa01LNT0057300.3 | 1 | qPHT1-1 | Morphological trait | Dwarf | RZ730 | RG810 |
| Osa01LNT0057300.3 | 1 | sd-1 | Morphological trait | Dwarf | RZ730 | RG810 |
| Osa01LNT0057300.3 | 1 | qRIE 1 | Resistance or Tolerance | Submergency tolerance | C86 | G54 |
| Osa01LNT0057300.3 | 1 | nan | Morphological trait | Culm/leaf | RZ801 | RZ14 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)